FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4029805
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG110110.27323902769488845No Hit
GGGGGT83490.2071812407796407No Hit
GGGGTG71890.17839572882558835No Hit
GGTGGG64130.1591392139321878No Hit
GTGGGG63550.15769993833448517No Hit
TGGGGG60620.15042911505643572No Hit
GGGTGG58910.1461857335528642No Hit
CGGGGG55330.13730192900152738No Hit
AGGGGG55250.13710340822943046No Hit
GGGGTT52860.1311726001630352No Hit
GGTGGT51750.12841812445019052No Hit
GGGGAG51170.1269788488524879No Hit
GAGGGG50880.1262592110536366No Hit
GGGGCG50180.12452215429778861No Hit
GGGGGC47670.11829356507324795No Hit
GGTGTG47480.11782207823951779No Hit
GGCGGG46960.11653169322088787No Hit
GGAGGG46200.11464574588596718No Hit
GTGGGT45760.11355388163943417No Hit
GGGTTG44890.11139496824288024No Hit
GCGGGG44010.1092112397498142No Hit
GTGTGG43870.1088638283986446No Hit
TTGGGG42560.10561305075555766No Hit
GGGCGG41980.10417377515785503No Hit
GGTTTG41490.10295783542876144No Hit
GGGGGA41080.10194041647176476No Hit
GGGGCT40800.10124559376942556No Hit
GCGGGT40750.10112151828686498No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)