FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22957264
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1425580.6209712098096707No Hit
GGGGGT742820.3235664319580939No Hit
GGGTGG696990.3036032516766807No Hit
GTGGGG690370.3007196327924791No Hit
CGGGGG684150.2980102506988638No Hit
TGGGGG681000.2966381359729975No Hit
AGGGGG624640.27208817217940257No Hit
GGGCGG549490.23935343514802113No Hit
GGGGTG528860.2303671726735381No Hit
GGGGCG528480.23020164772248122No Hit
GCGGGG523900.22820663647026926No Hit
GGTGGG512670.22331493857456183No Hit
GGGAGG493960.21516501269489255No Hit
GGGGGC488820.21292606993585997No Hit
GGAGGG476860.2077163898973327No Hit
GGGGAG476280.2074637465509827No Hit
GGGGGA464510.20233682898798394No Hit
GGCGGG456330.19877368662049621No Hit
GAGGGG440230.19176065579940188No Hit
GGGTGT410300.1787233879437898No Hit
TGGGGT398270.17348321646691No Hit
TTGGGG379750.16541605306276916No Hit
GTGTGG379670.16538120570465192No Hit
GTGGGT379510.16531151098841743No Hit
TGGTGG369120.160785710352941No Hit
CTGGGG364860.15893008853319804No Hit
CGGGGT358790.15628604523605252No Hit
GGGGTT352570.15357666314243718No Hit
CGGTGG349170.15209565042245454No Hit
AGGTGG345290.15040555355376845No Hit
GGGTTG343720.14972167415071763No Hit
AGGGGT337510.14701664797686692No Hit
ATGGGG333820.14540931358370926No Hit
GGTGGT324610.14139751148046215No Hit
CCGGGG324110.1411797154922294No Hit
GTGGTG316250.13775596255721065No Hit
GGGTCG308690.13446288721513155No Hit
GGGTAG306480.13350022894714283No Hit
CGGGTG304000.13241996084550842No Hit
TCGGGG302500.1317665728808102No Hit
GTGGCG302150.13161411568904727No Hit
GGGGCT302060.13157491241116537No Hit
GGGCGT301860.13148779401587227No Hit
GGTTGG296920.12933596965213276No Hit
TGTGGG296820.12929241045448622No Hit
GTTGGG295630.12877405600249228No Hit
TGGGTG294040.12808146475991217No Hit
GGCTGG292230.12729304328250962No Hit
GTAGGG284800.12405659489737104No Hit
GGAGGT282130.12289356432020819No Hit
CAGGGG277670.1209508241051721No Hit
GGATGG273930.1193217101131912No Hit
GTGCGG271610.11831113672779127No Hit
GTCGGG270460.11781020595485596No Hit
TAGGGG268980.11716552982968702No Hit
GCGGGT266740.11618980380240433No Hit
GGCGGT265270.11554948359700007No Hit
GGGCTG265170.11550592439935352No Hit
GTGGAG264090.11503548506477078No Hit
TGGGCG263110.1146086049278346No Hit
TGGGGA263000.1145606898104234No Hit
GGGGTA262890.1145127746930122No Hit
CGGGGA262800.1144735714151303No Hit
CGGGCG261880.11407282679678206No Hit
GGGGAT257780.11228689969327356No Hit
GAGGGT257190.11202990042715891No Hit
AAGGGG253890.11059244690482281No Hit
ACGGGG251400.10950782288342373No Hit
TGGGGC249890.10885007899896085No Hit
TGAGGG249310.10859743565261087No Hit
AGGGTG248880.1084101311027307No Hit
CGGCGG247930.1079963187250885No Hit
TGGGAG247430.10777852273685576No Hit
CGTGGG246390.10732550708133165No Hit
GGGCCG245890.1071077110930989No Hit
CGCGGG245830.10708157557451096No Hit
TGGCGG245000.10672003423404461No Hit
GGGTGA244560.10652837376439979No Hit
GGGTGC244400.10645867904816532No Hit
GCTGGG242780.10575302004629122No Hit
GCGTGG242350.10556571549641108No Hit
TGCGGG242170.10548730894064728No Hit
GTGAGG240990.10497331040841801No Hit
AGCGGG238750.10399758438113531No Hit
AGGGCG236860.10317431554561554No Hit
CGGGGC236360.1029565195573828No Hit
GTGTGT235980.1027909946063259No Hit
AGTGGG235300.10249479206232938No Hit
GGGAGT235260.10247736838327076No Hit
TGGAGG234480.10213760664162769No Hit
CGAGGG233660.10178042122092597No Hit
GGTCGG233450.10168894690586823No Hit
CTGTGG230470.10039088281600109No Hit
CGGGAG230010.10019051050682694No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)