FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483325

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483325
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11393924
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG751040.6591583373734984No Hit
GGGGGT392640.34460472090212296No Hit
GTGGGG355440.3119557406210538No Hit
GGGTGG338590.2971671568109459No Hit
GGGGGC334990.29400757807406824No Hit
CGGGGG333480.2926823103261001No Hit
GGCGGG325790.28593309907982534No Hit
GCGGGG320420.28122006079731615No Hit
GGGCGG309500.27163600529545395No Hit
AGGGGG309000.2711971749153321No Hit
GGGGTG303680.2665280196708351No Hit
GGTGGG290430.25489901459760483No Hit
GGGGCG290390.25486390816719506No Hit
TGGGGG289130.2537580556092879No Hit
GGGAGG272560.23921521681204827No Hit
GGGGGA268420.23558170126463893No Hit
GAGGGG265980.2334402090096441No Hit
GGAGGG262640.2305088220704298No Hit
GGGGAG248120.21776518783168994No Hit
GTGTGG190650.16732602394047916No Hit
GGGTGT179950.15793505380587056No Hit
GGCGGT173980.15269541906721512No Hit
CGGGGT172890.1517387688385494No Hit
GTGGGT170740.14985179820402522No Hit
GGGGTT167800.1472714755689085No Hit
AGGGGT167770.14724514574610117No Hit
GGGTTG166840.14642892123907444No Hit
CGGTGG166740.14634115516305005No Hit
GGCTGG165070.14487546169344293No Hit
GGTGGT163320.1433395553630163No Hit
GGGGCT161650.14187386189340917No Hit
GGTTGG161250.14152279758931163No Hit
AGGTGG159250.13976747606882406No Hit
GTCGGG158610.13920577318226804No Hit
GGGCCG157200.1379682715103243No Hit
GGCCGG156750.13757332416821458No Hit
GGGCGT156040.13695018502844147No Hit
TGGGGT155490.1364674716103074No Hit
ATGGGG151490.13295682856933222No Hit
GGATGG150690.13225469996113717No Hit
GCCGGG148120.12999911180731064No Hit
CCGGGG147640.1295778346423936No Hit
GGGGCA147260.129244323553501No Hit
GGGTAG146500.12857730137571569No Hit
CGCGGG146420.12850708851489617No Hit
CAGGGG146170.12828767332483523No Hit
GCGGGT145140.12738368274178413No Hit
GGGTCG143710.1261286278546355No Hit
GGAGGT143630.126058414993816No Hit
GGGGAT143630.126058414993816No Hit
GTGGGC142610.12516320101836734No Hit
GGGGTA142410.12498766886631857No Hit
GTGGTG141980.12461027473941375No Hit
AGCGGG141770.12442596597976255No Hit
GTGGCG139950.12282862339611884No Hit
CTGGGG139540.12246878248441889No Hit
GGGTGC138790.12181053691423605No Hit
GGCGGA137630.12079245043235323No Hit
TGCGGG137630.12079245043235323No Hit
CGGGTG137560.12073101417913618No Hit
GGGCAG137380.1205730352422923No Hit
GTTGGG136780.12004643878614603No Hit
CGGCGG136220.11955494876040948No Hit
ACGGGG135410.11884404354461202No Hit
AAGGGG135040.11851930906332181No Hit
GGCGCG134710.11822968101244137No Hit
GGCAGG134490.11803659564518774No Hit
GGCGTG133470.11714138166973906No Hit
GGGGCC133080.11679909397324399No Hit
TGGCGG132870.1166147852135928No Hit
GTGCGG132490.11628127412470016No Hit
CGGGGC132280.11609696536504896No Hit
GTAGGG129470.11363073862876388No Hit
GGGGTC129420.1135868555907517No Hit
GCGCGG129250.11343765326151026No Hit
GTGGAG129170.11336744040069074No Hit
GGGCGC129050.1132621211094615No Hit
TCGGGG128620.11288472698255667No Hit
TTGGGG128550.11282329072933961No Hit
CGGGCG128090.11241956677962746No Hit
GCGTGG127950.11229669427319333No Hit
GGTCGG127340.11176132120944461No Hit
GGGCTG127210.11164722531061293No Hit
GTGGGA126790.11127860779131052No Hit
GGTGGC125800.11040972363866917No Hit
CGAGGG125480.11012887219539115No Hit
GGGGAA124780.10951450966322052No Hit
GGCGGC124730.1094706266252083No Hit
GGTGCG124560.10932142429596688No Hit
TGGGCG123120.10805759280121581No Hit
TGGAGG122290.10732913437021345No Hit
GCAGGG120980.1061793987742941No Hit
AGGGGC120910.10611796252107702No Hit
GCGGGC120110.10541583391288198No Hit
GGGAGT119940.10526663158364055No Hit
GGGTGA119010.10445040707661381No Hit
CGGGGA117880.10345865041753834No Hit
GAGGGT117620.10323045861987494No Hit
GGCGAG117520.10314269254385056No Hit
TGGTGG116840.1025458832268848No Hit
GACGGG116510.10225625517600434No Hit
GGGACG115630.1014839137069898No Hit
GCTGGG115550.1014137008461703No Hit
GGTAGG115520.10138737102336297No Hit
GGGATG115410.10129082833973617No Hit
CGGAGG115310.10120306226371178No Hit
GGGAGA114930.10086955117481913No Hit
GAAGGG114870.1008168915292045No Hit
GCGGGA114270.10029029507305823No Hit
TGTGGG114070.10011476292100949No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)