FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20967358
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG498120.2375692731530601No Hit
TGCAAT362230.17275900950420173No Hit
GGGGGT318580.15194093600156966No Hit
GTGGGG307170.14649914405048076No Hit
GGGGTG273940.13065070000712536No Hit
GGGTGG268070.12785111028294552No Hit
CGGGGG267040.1273598705187368No Hit
GGTGGG258770.12341564445076962No Hit
GCGGGG258210.12314856263721924No Hit
TGGGGG256680.12241885696805481No Hit
GGGGTT252100.12023450927866065No Hit
GGGGGC242260.11554150026913262No Hit
GGCGGG241920.11537934345376274No Hit
AGGGGG230990.11016647877143129No Hit
GGGCGG228810.10912676742582447No Hit
GGGGCG227230.10837321516616447No Hit
GGAGGG222900.10630810042924818No Hit
GTGGGT218350.10413806069415135No Hit
GGTGGT215030.10255464708524556No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)