FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483331

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483331
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2372882
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT534982.2545579594771255No Hit
AATTTC190130.8012619253717631No Hit
GGGGGG48250.20333923052220887No Hit
GGTGGG46290.19507923276420824No Hit
GGGGGT43670.18403780718973806No Hit
GCATTT43080.18155137929319703No Hit
TGCAAT42900.18079280807052353No Hit
GGGTGG41590.1752720952832884No Hit
TGGGGG39600.16688566898817558No Hit
GTGTGT38980.1642728125545223No Hit
GCGGGG38510.16229209880643033No Hit
TTTGTT35880.15120853038625603No Hit
GGGGTG35700.1504499591635825No Hit
GTAATT34730.14636210313028628No Hit
GGTGGC33980.14320138970247995No Hit
GCAATG30430.12824067947752985No Hit
GGTGTG30000.1264285371122542No Hit
GGGGAG29920.12609139434662153No Hit
GGGTGC29620.124827108975499No Hit
GGGGCA29270.12335210937585601No Hit
TGGGGC28540.12027568163945784No Hit
TTTTTT28400.11968568179960065No Hit
GGGTGA28200.11884282488551895No Hit
GTGGTG27640.11648282552609021No Hit
GTGGCG27600.11631425414327387No Hit
GGTGGT27370.11534496869207993No Hit
GGTGCA26270.11070925566463062No Hit
GTGTGG26130.11011925582477343No Hit
GGGGGC26010.1096135416763244No Hit
GGGTGT25980.10948711313921214No Hit
GGCTGG25480.10737997085400791No Hit
GGGGGA25200.10619997117429353No Hit
GTGGAG25200.10619997117429353No Hit
GTTGGT24970.10523068572309958No Hit
ATTGGG24820.10459854303753832No Hit
GGGAGG24740.10426140027190564No Hit
GGGCGT24590.10362925758634436No Hit
GACGGG24560.10350282904923211No Hit
GGTTGT24470.10312354343789536No Hit
GGAGGA24250.1021964008324055No Hit
GAAGTT24120.10164854383825238No Hit
GGCGCT23930.10084782976987477No Hit
GTGGGG23890.10067925838705843No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)