FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483333

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483333
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1010616
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGG27580.27290286320422397No Hit
GGGGGG24980.24717597979845957No Hit
GGTGGG23930.23678627688459314No Hit
TGTGGT23580.233323042579971No Hit
GGGTGG21230.2100698979632224No Hit
GTTGGG20260.2004717914618411No Hit
TGGGTG19440.19235792823386924No Hit
GGGGGT19240.19037893720265658No Hit
GGAGGG19140.18938944168705027No Hit
TGGGGG18700.18503566141838246No Hit
GCGGGG17680.17494280715919794No Hit
GGTTGG17240.17058902689053013No Hit
GTGGTG16970.16791738899839306No Hit
GGATGG16210.160397223079785No Hit
CGGGGG15400.1523823094033738No Hit
TATGGG15000.1484243273409485No Hit
CTGTGG14980.14822642823782722No Hit
GTCGGG14590.14436739572696256No Hit
AGGGGG14390.14238840469574993No Hit
GTGGAG14110.13961781725205222No Hit
GGTCGG13850.13704512891147577No Hit
GTGAGG13700.1355608856380663No Hit
GGGAGG13390.13249344953968667No Hit
GGGTGT13390.13249344953968667No Hit
CATGGT13120.12982181164754963No Hit
GGGCAG13120.12982181164754963No Hit
GATGGG12780.1264575268944881No Hit
GGGGCT12690.12556698093044244No Hit
GGGTCC12360.12230164572894155No Hit
GTGTTG12340.1221037466258203No Hit
GAGGGG12230.12101530155865334No Hit
GTGGTT12030.11903631052744068No Hit
AGTGGG11990.11864051232119815No Hit
TTGTGG11820.1169583699446674No Hit
GGAGGA11810.11685942039310677No Hit
TTGGGT11710.11586992487750045No Hit
CTGTTG11690.1156720257743792No Hit
CCTGGG11690.1156720257743792No Hit
CCCGGG11690.1156720257743792No Hit
GGGGTA11660.1153751771196973No Hit
GGGGGA11570.11448463115565159No Hit
AGAGTG11560.11438568160409097No Hit
GGGCGT11410.11290143833068149No Hit
TGGGAT11380.1126045896759996No Hit
GGCAGG11190.11072454819634758No Hit
GAATAG11180.11062559864478694No Hit
TAGCGG10990.10874555716513493No Hit
AGAGGG10950.1083497589588924No Hit
GGGGTG10920.1080529103042105No Hit
GGAGGT10890.1077560616495286No Hit
GCAAGG10860.1074592129948467No Hit
CTGGGA10850.10736026344328607No Hit
GGAGGC10820.10706341478860418No Hit
GGCTGG10810.10696446523704355No Hit
GGCGGT10760.10646971747924039No Hit
TTGGTG10700.1058760201698766No Hit
CATTGG10690.10577707061831597No Hit
GCCGAT10690.10577707061831597No Hit
CGGGTG10640.1052823228605128No Hit
GGGGAA10610.10498547420583089No Hit
GTGGTA10590.10478757510270964No Hit
CCGGTA10580.104688625551149No Hit
GTGTGG10430.10320438227773951No Hit
GGGCGC10430.10320438227773951No Hit
GTAGAG10400.10290753362305761No Hit
AGTGGA10360.10251173541681509No Hit
GGGATG10280.10172013900433002No Hit
CAGGGG10220.10112644169496623No Hit
AGGTTG10170.10063169393716308No Hit
TTGTTG10120.10013694617935992No Hit
TGCGTT10120.10013694617935992No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)