FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13352274
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG530720.3974753663683055No Hit
GGGGGT304270.2278787867894263No Hit
GGGTGG302880.2268377656120598No Hit
GTGGGG292300.21891402168649327No Hit
TGGGGG291720.21847963874917484No Hit
GGGGTG278560.2086236396886403No Hit
GGTGGG275560.20637683139216587No Hit
CGGGGG227040.17003845187718586No Hit
AGGGGG224960.16848066479163024No Hit
GGGGCG222660.16675811176433317No Hit
GGGGGC218780.16385223970089288No Hit
GCGGGG217000.16251913344498473No Hit
GGCGGG216840.16239930366917277No Hit
GGGCGG215450.16135828249180625No Hit
GAGGGG205180.1536667087568754No Hit
GGTGGT204870.15343453856623973No Hit
GGGGGA199140.14914313471997354No Hit
GTGTGG196280.14700117747733457No Hit
GGGTGT192030.14381819905732912No Hit
GGGTTG188150.14091232699388884No Hit
GGAGGG186600.13975147604071037No Hit
GGGAGG184720.1383434761749197No Hit
GGTTGG181920.13624645509821023No Hit
GGGGTT180510.13519045519886724No Hit
GGGGAG179420.1343741148511482No Hit
GTGGGT177250.13274892351669837No Hit
TGGGGT168930.1265177751744759No Hit
TGGTGG167300.12529700933339147No Hit
GTGGTG165040.12360441375004737No Hit
GGTGTG163390.12236866918698643No Hit
GTTGGG157160.11770279729130784No Hit
GGGTAG155100.11615998892772872No Hit
TGTGGG152810.11444492526141989No Hit
TTGGGG152150.11395062743619552No Hit
GGCTGG144950.10855828752465685No Hit
GGGGCT144840.10847590455378613No Hit
GGATGG142930.10704543660503073No Hit
TGGGTG142270.10655113877980635No Hit
GGGCGT141520.10598943670568774No Hit
AGGTGG141390.1058920750128405No Hit
CGGGGT139710.10463386236681481No Hit
GGCGGT138560.10377258585316629No Hit
GTGGCG137420.10291879870050599No Hit
GGGTTT137190.1027465433977763No Hit
GTGTGT137140.10270909659283506No Hit
GGGTCG137070.1026566710659173No Hit
AGGGGT136510.10223726685057541No Hit
ATGGGG133720.10014773513485418No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)