FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3854848
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG188280.48842392748040914No Hit
GGGGGT132650.3441121413866383No Hit
GGGTGG115590.29985618109974765No Hit
GTGGGG103400.26823366316907954No Hit
GGGGTG101780.26403116283703015No Hit
TGGGGG91860.23829733364324612No Hit
GGTGGG89580.2323827035462877No Hit
GGGGCG77180.20021541705405763No Hit
AGGGGG76560.19860705272944615No Hit
GGGCGG75490.19583132720148755No Hit
GGTTGG73880.19165476822951255No Hit
CGGGGG73100.18963134214371097No Hit
GGGGGC70110.18187487548147163No Hit
GGGGGA69140.1793585635542569No Hit
GGCGGG68710.17824308507105857No Hit
TTGGGG66470.17243222041439765No Hit
GGGGAG66180.17167992097224066No Hit
GGGTGT65540.1700196739274804No Hit
GGGTTG63800.16550587727453844No Hit
GCGGGG63160.1638456302297782No Hit
GTGGTG62740.1627560931066543No Hit
GGAGGG62510.16215944182494357No Hit
GAGGGG61900.16057701886040643No Hit
GGGAGG60610.15723058341081153No Hit
GTGGGT60260.15632263580820827No Hit
GGGGTT58650.15214607683623324No Hit
TGGGGT56720.14713939434187806No Hit
GTTGGG56600.14682809802098554No Hit
TGGTGG56250.14592015041838224No Hit
GTGTGG55920.14506408553592776No Hit
TGGGTG54160.14049840616283704No Hit
GGTGGT51890.13460971742595298No Hit
TAGGGG51800.13437624518528357No Hit
TGGTGT51510.13362394574312658No Hit
GTGTTG49690.1289026182095896No Hit
GTGGCG49240.12773525700624253No Hit
AGGTGG48680.1262825408420773No Hit
GGGAGT48250.125167062358879No Hit
GGGGCT48090.12475200059768893No Hit
GGTGTG47660.12363652211449064No Hit
GGGTTT47360.12285828131225927No Hit
GTGGGA47010.121950333709656No Hit
GTGGGC46820.12145744786824278No Hit
GTCGGG45850.11894113594102802No Hit
AGGGTG45840.11891519458095365No Hit
GGGTAG45250.1173846543365653No Hit
GGGGTC44860.1163729412936645No Hit
GGGATG44370.11510181465001992No Hit
TGTGGG44210.11468675288882986No Hit
CGGTGG44180.11460892880860672No Hit
GGGGTA43970.11406416024704476No Hit
AGGGGT43910.1139085120865985No Hit
GTGCGG43630.11318215400451587No Hit
GGGCTG42890.11126249335901182No Hit
GTAGGG42440.11009513215566476No Hit
ATGGGG42370.10991354263514411No Hit
GCAATT42050.10908341911276397No Hit
GGTTGT41950.10882400551202019No Hit
GGGCGT41830.10851270919112763No Hit
TGGCGG41730.10825329559038385No Hit
TTGTGG41320.1071896998273343No Hit
CGGCGG41020.10641145902510293No Hit
GGTTTG40770.10576292502324347No Hit
CGGGGT40680.10552945278257404No Hit
GGGCCG40310.10456962245982203No Hit
TGAGGG40290.10451773973967327No Hit
GGCAGG40250.10441397429937574No Hit
TGGGGC40130.1041026779784832No Hit
GGCTGG39990.10373949893744189No Hit
GAGTGG39830.10332443717625184No Hit
GGATGG39620.10277966861468987No Hit
GGCGGT39190.10166419013149157No Hit
ATCTCG39050.10130101109045025No Hit
GGGGAT39040.10127506973037588No Hit
GGGTCG39010.10119724565015274No Hit
GGAGTG38900.10091189068933458No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)