FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11953613
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG789010.660059849687287No Hit
GGGGGT473750.3963236889131344No Hit
GGGTGG402310.33655933147576383No Hit
GTGGGG368490.308266630348498No Hit
TGGGGG357040.29868793644231245No Hit
GGGGTG336310.2813458993527731No Hit
GGTGGG316400.2646898473290042No Hit
CGGGGG314710.2632760488397943No Hit
AGGGGG301830.2525010639042773No Hit
GGGGGA288890.2416758849395576No Hit
GCGGGG275170.23019818359520258No Hit
GGGCGG274660.22977153434697944No Hit
GGGTGT274330.22949546718636452No Hit
GGGGGC272710.22814022839789108No Hit
GGCGGG272520.22798128063874915No Hit
GGGAGG258640.2163697285498535No Hit
GGGGTT255330.21360069127217018No Hit
GAGGGG243920.20405546005211977No Hit
GGGGAG243030.2033109152856128No Hit
GGAGGG238250.19931212429246287No Hit
GTGTGG237310.19852575116828694No Hit
GTGGGT225530.18867099010148647No Hit
GGTGGT219470.18360139315201188No Hit
GGGGCG218780.1830241618161806No Hit
GGGTTG218290.18261424391102504No Hit
TGGGGT217750.18216249764820058No Hit
TGGTGG204510.1710863485374673No Hit
GTTGGG198490.16605021427412783No Hit
TTGGGG196480.16436871429583674No Hit
GGTTGG188080.1573415502074561No Hit
AGGGGT186740.1562205502219287No Hit
CGGGGT184310.15418769203921862No Hit
CGGTGG182090.15233051295871802No Hit
GGCGGT176630.1477628563012706No Hit
GTGGTG175570.1468760951186892No Hit
GGGGCT174960.14636578915512824No Hit
ATGGGG174070.14562124438862123No Hit
AGGTGG172690.1444667817169587No Hit
CTGGGG167030.13973181162883558No Hit
GGGGAT165670.13859408030024062No Hit
GCGGGT165020.1380503116505445No Hit
GGCTGG164820.13788299821986874No Hit
GGGGTA164110.1372890355409699No Hit
GGGCGT162020.13554061019040853No Hit
TGTGGG159220.13319822216094832No Hit
TGGGTG158820.13286359529959688No Hit
GGGTCG158720.13277993858425902No Hit
GGATGG156700.13109007293443412No Hit
GGGTGA155930.1304459162263326No Hit
GGGTTT154670.1293918416130755No Hit
GGGTGC154310.12909067743785918No Hit
TCGGGG153720.12859710281736575No Hit
GTCGGG153450.12837122968595352No Hit
GGTGTG150300.12573604315281078No Hit
GTAGGG149620.1251671774885133No Hit
GAGGGT149580.12513371480237814No Hit
GGGGTC148640.12434734167820222No Hit
TGCGGG146740.1227578640867828No Hit
GTGGGC146240.12233958051009347No Hit
GTGGGA145900.12205514767794473No Hit
GGGAGT145100.12138589395524182No Hit
GGAGGT144920.12123531186763366No Hit
GCGTGG143750.12025652829818065No Hit
GGGTAG143740.12024816262664687No Hit
GTGCGG143390.11995536412296433No Hit
GAGTGG142540.11924428204259248No Hit
GTGAGG141430.1183156925023422No Hit
TAGGGG140470.11751258803509868No Hit
GTGGAG138720.11604859551668605No Hit
GTGTGT138290.11568887164073323No Hit
GGTGGA136730.11438382688146254No Hit
TGGGGA136460.1141579537500503No Hit
GGTTGT135130.1130453194360567No Hit
GTGGCG135050.11297839406378642No Hit
GTGTTG134730.11271069257470524No Hit
TGGGCG133890.11200797616586716No Hit
GGGCTG131130.10969905082254211No Hit
TGGCGG130790.10941461799039336No Hit
GAGGTG129830.10861151352314986No Hit
GGGGCC128930.10785860308510908No Hit
TGGGGC128600.10758253592449411No Hit
GTGGTT128510.10750724488069005No Hit
TGAGGG126850.1061185434060815No Hit
GGTGTT126570.10588430460313548No Hit
GTTTGG125790.10523178222350013No Hit
CAGGGG125290.1048134986468108No Hit
TTGTGG125110.10466291655920265No Hit
GGTAGG124480.1041358792525741No Hit
CGGGTG124440.10410241656643895No Hit
AGGGTG124410.10407731955183758No Hit
GGTCGG124390.10406058820877002No Hit
TTGGGT123130.10300651359551292No Hit
GATGGG122520.10249620763195194No Hit
CCGGGG121940.10201099868299232No Hit
AGTGGG120250.10059720019378242No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)