FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25727376
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1744640.6781258998197095No Hit
GGGGGT852760.33146015357337644No Hit
CGGGGG822850.319834405187688No Hit
GGGTGG787570.30612138602864125No Hit
GTGGGG730050.2837638786015333No Hit
TGGGGG684310.26598515138115914No Hit
GGGGGC681680.2649628940005386No Hit
GGGGTG621390.2415287124501154No Hit
GGCGGG615860.2393792511136775No Hit
AGGGGG611590.2377195404614913No Hit
GCGGGG579230.22514149907864683No Hit
GGGCGG577790.22458178401093062No Hit
GGGGAG576460.22406482495533164No Hit
GGGGGA573310.22284044824470245No Hit
GGTGGG555160.21578570624536292No Hit
GGAGGG551860.21450302588184664No Hit
GAGGGG498950.19393738405346897No Hit
GGGAGG491320.19097167157661163No Hit
GGGTGT448340.1742657315693602No Hit
GGGGCG423760.16471170631626014No Hit
GTGTGG410060.15938663935257136No Hit
TGGGGT406200.15788629201827656No Hit
CGGGGT402830.15657640328341296No Hit
CGGTGG396700.15419372733542666No Hit
GTGGGT380550.14791636737458183No Hit
GGGGTT378500.14711955078512476No Hit
CTGGGG373680.1452460600723525No Hit
TGGTGG366620.14250190147646616No Hit
AGGGGT358640.13940014714287224No Hit
GGGCGT354940.13796199037165702No Hit
TTGGGG353390.1373595192918236No Hit
GGGTCG348450.13543938565674168No Hit
GGCTGG341580.13276907835451235No Hit
AGGTGG341530.13274964380354998No Hit
GGTGGT325990.126709385364446No Hit
GGGTAG325700.1265966649688643No Hit
ATGGGG324510.12613412265595994No Hit
CCGGGG321040.12478536481917162No Hit
GGGCCG319390.12414402463741347No Hit
GGTTGG318330.12373201215701128No Hit
GGCGGT315560.12265533803369609No Hit
GGAGGT315470.12262035584196383No Hit
GGGTTG314460.122227777912524No Hit
CGGGGC314350.1221850219004068No Hit
CAGGGG313270.12176523559961963No Hit
GCCGGG310710.1207701865903464No Hit
GGGGCT310690.12076241276996146No Hit
TAGGGG310520.12069633529668941No Hit
CGCGGG310410.1206535792845722No Hit
GGGGAT309120.1201521678697431No Hit
TCGGGG307150.11938644656182582No Hit
TGCGGG306770.11923874397451181No Hit
GGATGG305480.11873733255968273No Hit
TGGGGC304630.11840694519332248No Hit
GTCGGG304410.11832143316908807No Hit
ACGGGG299620.11645960318689322No Hit
GCGGGT297310.11556172693243182No Hit
CGGGTG294330.1144034276950747No Hit
GTAGGG293640.11413523089179403No Hit
GGGTGC292130.11354830745273052No Hit
GCGTGG289730.11261544900653686No Hit
GTTGGG289700.11260378827595942No Hit
AGGGGC285820.11109566712127969No Hit
CGTGGG285600.11101015509704527No Hit
GTGGTG284980.11076916666511191No Hit
GGCAGG283870.11033771963374735No Hit
GTGGGC283520.11020167777701076No Hit
GGGTGA283310.11012005266296881No Hit
AAGGGG283020.11000733226738707No Hit
TGGGTG280450.10900839634792137No Hit
GGCCGG279410.10860415768790413No Hit
CGGGGA277900.1080172342488406No Hit
GTGGAG274790.10680840517898132No Hit
CGAGGG273650.10636529741703935No Hit
TGTGGG272170.10579003470855325No Hit
GTGCGG269010.1045617710877316No Hit
GGGGCC268340.10430134810483586No Hit
GGGCAG265020.10301089392093464No Hit
GAGTGG264660.10287096515400561No Hit
GTGGCG264240.1027077149259217No Hit
AGTGGG263830.10254835160803029No Hit
GGGCGC262590.10206637474416357No Hit
CGGGAG262270.10194199361800442No Hit
GGGGAC261690.10171655282684094No Hit
CGGGCG261580.10167379681472374No Hit
GAGGGT260050.10107909955527528No Hit
TGGAGG258680.10054659285890641No Hit
GGGGTA258630.10052715830794402No Hit
AGGGTG258540.10049217611621176No Hit
TGAGGG258160.10034447352889778No Hit
GGGCTG258150.1003405866187053No Hit
GCTGGG258010.10028616987601068No Hit
AGGGGA257630.10013846728869667No Hit
GGCGTG257450.10006850290523216No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)