FastQCFastQC Report
Thu 9 May 2024
EGAF00005483371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10989237
Total Bases65.9 Mbp
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1170181.064841899396655No Hit
GGGGTG482500.4390659697302006No Hit
GGGGGT481990.438601879275149No Hit
GTGGGG473350.43073964097780404No Hit
CGGGGG468020.42588944073187246No Hit
TGGGGG456720.4156066522179838No Hit
GGTGGG438860.3993543864783333No Hit
GGCGGG428750.3901544756928984No Hit
GGGTGG420260.3824287345882157No Hit
GCGGGG410080.3731651251128718No Hit
GGGGAG368480.335309903681211No Hit
GGGCGG367890.3347730147234062No Hit
GGGGGA351800.3201314158571701No Hit
AGGGGG341420.3106858101249432No Hit
GGGGGC340700.3100306236001644No Hit
GGAGGG322850.293787457673358No Hit
GAGGGG321850.2928774763889431No Hit
GGGGCG307590.2799011432731863No Hit
GGGAGG274840.2500992562085975No Hit
TTGGGG246300.22412839035139565No Hit
GGGGTT244600.22258142216789026No Hit
GGGTTG236890.2155654664650512No Hit
GTGGTG220460.20061447396211401No Hit
GTTGGG218760.19906750577860866No Hit
GTCGGG217330.1977662325418953No Hit
TGGGTG207920.18920330865555088No Hit
CTGGGG206580.18798393373443487No Hit
TGGTGG205890.18735604664818858No Hit
GTGGGT202890.18462610279494382No Hit
GTGTGG198590.18071318327195965No Hit
GGCCGG197280.1795211077893761No Hit
CGGGTG193200.17580838414896321No Hit
GGGTGT193050.17567188695630098No Hit
CGGTGG192730.17538069294528819No Hit
CGGGGT191870.17459810904069137No Hit
TGTGGG190410.17326953636544556No Hit
TAGGGG189210.17217755882414768No Hit
GGTGTG188740.17174986762047265No Hit
GGTTGG188060.1711310803470705No Hit
TCGGGG186760.1699481046773311No Hit
TGGGGT186330.16955681272503267No Hit
TGCGGG185820.16909272226998107No Hit
CGCGGG184600.16798254510299487No Hit
GGTGGT183450.1669360666259177No Hit
GGCGGT181770.16540729806810064No Hit
GGGGTA181660.165307200126815No Hit
GGGGTC180730.16446091753230913No Hit
GTAGGG180570.16431532052680273No Hit
GGCGTG180570.16431532052680273No Hit
GGCTGG179480.16332344092679046No Hit
CGTGGG176190.16032960250106537No Hit
GCGGTG173830.15818204666984614No Hit
TGGCGG173380.15777255509185942No Hit
CCGGGG169770.15448752265512156No Hit
GCCGGG168100.15296785391014864No Hit
CAGGGG167450.15237636607527894No Hit
GGGCTG167290.15223076906977254No Hit
GTGGAG165560.15065650144773474No Hit
ATGGGG160990.1464978869779585No Hit
GGGATG160050.14564250457060848No Hit
GTGCGG159200.1448690204788558No Hit
GCGGGT158970.14465972478344039No Hit
GCGTGG158820.14452322759077815No Hit
GGTCGG158520.14425023320545366No Hit
GATGGG157310.1431491558513116No Hit
CGAGGG155850.14182058317606583No Hit
GGATGG155760.14173868486046848No Hit
GGAGGT155230.14125639477972857No Hit
AGTGGG154300.1404101121852227No Hit
TGGGGA152640.13889954325309392No Hit
GGGTAG152070.1383808539209774No Hit
TGGGGC151570.13792586327876993No Hit
GCTGGG150750.13717967862554972No Hit
GTGGGC150480.13693398367875767No Hit
GGGCGT150340.1368065862989396No Hit
AGGGGT149760.13627879715397895No Hit
AGCGGG148930.13552351268791454No Hit
GGGGAT148640.13525961811543422No Hit
GAGGTG145160.13209288324567028No Hit
GGGTGC144310.1313193991539176No Hit
CGGGGC143900.13094630682730748No Hit
GAGGGT143160.13027292067684043No Hit
TGAGGG142670.12982702984747713No Hit
GGGTGA141710.1289534478144388No Hit
GGGCAG141550.12880785080893242No Hit
GGACGG140910.12822546278690686No Hit
AGGGTG140480.12783417083460843No Hit
CGGGGA139230.1266966942290898No Hit
GAGTGG139150.12662389572633662No Hit
GGCGGA138110.12567751519054507No Hit
GGTGAG137930.12551371855935037No Hit
TGGGAG136760.12444904045658493No Hit
AGGTGG136370.12409414775566312No Hit
CGGCGG135420.12322966553546892No Hit
GCAGGG135100.12293847152445615No Hit
GGTAGG134830.12269277657766414No Hit
GGCGGC132150.12025402673543215No Hit
CGGGAG132030.12014482898130233No Hit
GGAGTG131820.11995373291157521No Hit
GGCGAG131060.11926214713541985No Hit
GGGTCG130450.11870705855192676No Hit
GGGGCT130380.11864335986201772No Hit
GGCAGG130090.1183794652895374No Hit
TGGAGG128800.11720558943264214No Hit
GTGGGA128710.11712369111704479No Hit
GGGCCG128490.11692349523447351No Hit
GACGGG128290.11674149897759052No Hit
GGTGGC128070.11654130309501924No Hit
ACGGGG126610.11521273041977345No Hit
GGGAGT125740.11442104670233247No Hit
GTGGCG125020.11376586017755373No Hit
GTGAGG124470.11326537047112552No Hit
TGGGCG124130.11295597683442443No Hit
AGAGGG120370.10953444720502434No Hit
GCGGGC119940.10914315525272592No Hit
TGGGTT119890.10909765618850517No Hit
TTGGGT119670.10889746030593389No Hit
GGCGCG119620.10885196124171313No Hit
GAAGGG118650.10796927939583066No Hit
GTGTTG118560.10788738108023332No Hit
TTTGGG118320.10766898557197375No Hit
GTTTGG118150.1075142887536232No Hit
GGTGGA117750.10715029623985722No Hit
GCGCGG117610.10702289886003916No Hit
AAGGGG116260.10579442412607899No Hit
CGGGCG116240.1057762245003907No Hit
TTCGGG115820.10539403236093643No Hit
GGGGAA115400.10501184022148216No Hit
GAGCGG114790.10445675163798906No Hit
GGGCGA113980.10371966679761296No Hit
GGGGAC113580.10335567428384701No Hit
GAGGAG112940.10277328626182144No Hit
GTTGTG111590.1015448115278613No Hit
AGGCGG110730.10076222762326448No Hit
GTGTGT110570.10061663061775808No Hit
GGGTTT110210.1002890373553687No Hit
AGGGGC110150.10023443847830382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)