FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10495956
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG534940.5096629597151512No Hit
CGGGGG279870.2666455537732818No Hit
GTGGGG263210.2507727738187927No Hit
GGGTGG249410.2376248528480874No Hit
GGGGGT244840.23327079496141181No Hit
TGGGGG242250.23080317790966348No Hit
GGGGTG241520.2301076719452711No Hit
GGCGGG236270.2251057454890245No Hit
GGTGGG226440.2157402336671381No Hit
AGGGGG223020.2124818358613546No Hit
GGGGCG219950.2095568998193209No Hit
GGGGGA217590.20730841478375098No Hit
GCGGGG215690.20549819378053794No Hit
GAGGGG209620.19971501404922049No Hit
GGGGGC205510.19579922019490173No Hit
GGGCGG205430.19572300036318752No Hit
GGAGGG203370.193760339696546No Hit
GGGGAG194200.18502364148630196No Hit
GGGAGG180410.17188524799456095No Hit
GGGTGT142700.13595712482026412No Hit
GTCGGG140060.1334418703736944No Hit
CTGGGG136630.13017394508894664No Hit
GTGGGT134870.1284971087912335No Hit
TGCGGG133870.1275443608948056No Hit
CGGTGG131260.1250576888851287No Hit
GTAGGG129750.12361903956152255No Hit
GTGTGG129080.12298069847091583No Hit
GTTGGG128540.12246621460684477No Hit
CCGGGG127870.12182787351623806No Hit
GGTGGT127480.12145630183663118No Hit
CGGGGT127440.12141819192077406No Hit
CGCGGG126140.12017961965541776No Hit
GGTTGG124670.11877908024766873No Hit
GGGGTT124470.11858853066838314No Hit
CGGGTG124320.11844561848391895No Hit
GGGTAG123220.11739759579784824No Hit
CGTGGG121840.11608280370077771No Hit
AGCGGG121080.11535871529949249No Hit
TTGGGG120500.11480612151956429No Hit
GGCCGG119710.11405345068138625No Hit
CAGGGG119690.11403439572345768No Hit
GGGGTA118680.11307212034806548No Hit
GGCGGT118680.11307212034806548No Hit
GGCTGG118560.11295779060049413No Hit
TGTGGG117770.11220511976231606No Hit
TGAGGG117170.11163347102445932No Hit
GGCGTG116760.11124284438692389No Hit
GGGTTG115560.11009954691121038No Hit
GGCAGG115320.10987088741606767No Hit
CGGGGC115090.10965175539988925No Hit
GTGCGG114260.10886097464585408No Hit
GGCGCG113280.10792728170735472No Hit
CGAGGG112650.10732705053260513No Hit
GCCGGG112630.10730799557467657No Hit
TGGTGG112420.10710791851642672No Hit
GTGGTG111980.10668870944199843No Hit
GCAGGG111540.10626950036757014No Hit
GGGCCG111350.10608847826724882No Hit
TGGGTG111120.1058693462510704No Hit
GAAGGG109850.10465935642260694No Hit
GGTAGG109760.10457360911192845No Hit
GGGGCT109010.10385904818960749No Hit
GTGGAG108070.10296346516696527No Hit
GAGGGT107140.10207740962328729No Hit
GGGATG107120.10205835466535874No Hit
ATGGGG106970.10191544248089454No Hit
GGGTCG106810.10176300281746609No Hit
GGCGGA106100.10108655181100226No Hit
GGCGAG105420.10043868324143128No Hit
GAGTGG105350.10037199088868132No Hit
TAGGGG105100.10013380391457434No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)