FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483375

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483375
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10824961
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG784700.7248986855472274No Hit
GGGGGT355640.3285369804103682No Hit
TGGGGG346470.3200658182509849No Hit
GGGTGG333550.3081304403775681No Hit
GTGGGG328480.3034468207321948No Hit
GGGGTG316720.29258304025298565No Hit
AGGGGG314890.29089250298453734No Hit
CGGGGG305900.28258762317942765No Hit
GGTGGG303790.28063842447099807No Hit
GGCGGG288260.26629195246061393No Hit
GGGCGG285670.26389933414078814No Hit
GCGGGG283200.26161757072381137No Hit
GAGGGG276920.25581616414137653No Hit
GGGGGC274280.253377356278697No Hit
GGGGGA262990.2429477575023134No Hit
GGAGGG258070.2384027064855014No Hit
GGGAGG255750.23625951169708603No Hit
GGGGCG251440.23227797310309017No Hit
GGGGAG249000.23002392341182568No Hit
TTGGGG175960.1625502392110235No Hit
TGGTGG174080.16081351239972133No Hit
TGGGTG168920.1560467515772112No Hit
TGGGGT168850.15598208621721593No Hit
GGGGTT165470.15285967312030038No Hit
GTGTGG165320.15272110449173903No Hit
GTGGGT163820.15133541820612564No Hit
GGGTGT162490.15010677636621508No Hit
GGGTTG159860.14767720641210624No Hit
AGGTGG157970.14593124169223334No Hit
ATGGGG157090.14511830573800683No Hit
GTGGTG156470.14454555540661995No Hit
TGTGGG152910.14125685995543077No Hit
CGGTGG151770.1402037383783646No Hit
GGTGGT149420.13803282986423693No Hit
GGGGTA148680.13734922463000096No Hit
GGTTGG147500.13625915141865175No Hit
AGGGGT147450.13621296187579798No Hit
GGGTAG140850.130115942219099No Hit
CTGGGG139600.12896120364775449No Hit
CGGGGT138660.1280928402421034No Hit
TGGGGA137270.12680877095076834No Hit
TAGGGG137190.12673486768220227No Hit
AGGGTG134950.12466557616235291No Hit
GGGCGT134410.12416672909953208No Hit
GTAGGG134220.12399120883668774No Hit
TGCGGG133760.12356626504243294No Hit
GGGGAT133140.12299351471104607No Hit
GTTGGG132670.12255933300822054No Hit
GGAGGT132040.1219773447682629No Hit
GGCGGT130600.12064708593407403No Hit
TGGAGG129420.11955701272272483No Hit
GGCCGG128820.11900273820847945No Hit
GGGATG128580.1187810284027813No Hit
GGTGTG128190.11842074996852181No Hit
GAGGGT128140.11837456042566805No Hit
GGGTGA127650.11792190290570101No Hit
GTCGGG127470.1177556205514274No Hit
AAGGGG126830.117164394402899No Hit
GGATGG126680.11702582577433765No Hit
AGTGGG125720.11613898655154509No Hit
TCGGGG125460.11589880092870543No Hit
GTGAGG125320.11576947020871484No Hit
GCGGGT124960.11543690550016764No Hit
GGGAGT124560.11506738915733739No Hit
GGTGAG124380.11490110680306377No Hit
GGGCTG123740.11430988065453539No Hit
GTGGAG122450.11311819044890785No Hit
TGAGGG121730.11245306103181342No Hit
TGGGCG120610.11141841527188875No Hit
CGGGTG120600.11140917736331798No Hit
GGGGCT120560.11137222572903495No Hit
TGGGGC120270.11110432638048304No Hit
GGCTGG119730.11060547931766221No Hit
GTGGCG119390.1102913904262565No Hit
TGGCGG119020.10994958780913852No Hit
GGCGTG118390.1093675995691809No Hit
GAGGTG118330.10931217211775637No Hit
GTGGGA117810.10883180087207704No Hit
TGGGAG117570.1086100910663789No Hit
GATGGG117350.10840685707782227No Hit
CAGGGG116630.10774172766072783No Hit
GTGGGC116240.10738144922646835No Hit
GCGTGG116060.10721516687219473No Hit
AGGGGA115390.10659622699795408No Hit
GGGGTC115320.10653156163795878No Hit
GGTAGG114910.10615280738655779No Hit
ACGGGG114650.10591262176371813No Hit
GGGCAG114050.10535834724947277No Hit
GGGTCG113650.10498883090664253No Hit
GGGGCC112700.10411122959242071No Hit
GCGGTG112500.10392647142100557No Hit
GGAGTG112400.10383409233529803No Hit
GGCAGG112290.10373247534101972No Hit
GAGTGG111640.10313201128392058No Hit
CCGGGG110870.10242069232397236No Hit
GTGCGG110580.10215279297542042No Hit
GGGAAG109340.10100729231264666No Hit
GGGGAA109240.10091491322693912No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)