FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4153921
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG163820.3943743754394944No Hit
TGCAAT109800.26432857052409037No Hit
GGGGGT109300.2631248885089533No Hit
GGTGGG105080.25296581230119686No Hit
GGGGTG86780.2089110505471818No Hit
GCAATT85370.20551666726449538No Hit
AATTTC82170.19781310236761845No Hit
GGGTGG81660.1965853467121787No Hit
GGGGTT81250.19559832745976632No Hit
TGGGGG79820.19215579689647444No Hit
GGGGAG77750.18717255335380717No Hit
GTGGGG77000.18536703033110163No Hit
GGGTTG75770.18240597257386454No Hit
AGGGGG74900.18031156586752614No Hit
GAGGGG73930.1779764227581603No Hit
GGTGGT71420.17193393904217244No Hit
GCGGGG70680.17015248965976965No Hit
GGGCGG66400.15984897161019673No Hit
CGGGGG65670.15809159586809668No Hit
GGGAGG65480.1576341967023446No Hit
GGGGGC64220.1546009180241993No Hit
GGGGCG63440.15272317408058556No Hit
GTGTGG63310.15241021675664992No Hit
GGTTGG63060.1518083757490814No Hit
GGGTGT58270.14027710204406874No Hit
GGGGGA57890.13936230371256458No Hit
TTGGGG57780.13909749366923443No Hit
GGAGGG55270.1330550099532466No Hit
GGGTTT55210.13291056811143015No Hit
TGGTGG54590.13141800241266022No Hit
TGGGTG54090.1302143203975232No Hit
TGGGGT54030.13006987855570676No Hit
GTTGGG53520.128842122900267No Hit
TGTGGG52210.12568847602060798No Hit
AGGGTG50220.12089782160036265No Hit
GGTTTG50180.12080152703915169No Hit
GTGGTG49990.12034412787339961No Hit
CGGTGG49360.11882748853432697No Hit
GTGGGT47950.11543310525164055No Hit
GGCGGG47650.11471089604255834No Hit
GGTTGT47360.11401276047377885No Hit
AGGGGT47010.11317018306318295No Hit
GGGGCT46980.11309796214227473No Hit
GTGTGT46880.11285722573924732No Hit
GTTGGT46040.11083503995381713No Hit
TGTTGT44400.1068869629441677No Hit
GGGGAT43740.10529810268418682No Hit
GAGGGT43510.10474440895722378No Hit
GGATGG43350.10435923071237993No Hit
GGGATG43130.10382961062571966No Hit
GGTTTT43070.10368516878390321No Hit
GGGCTG43070.10368516878390321No Hit
GGTGTG42970.1034444323808758No Hit
AGGTGG42950.10339628510027032No Hit
TGGTTG42920.1033240641793621No Hit
GGGGTA42340.10192779304180316No Hit
GGGGTC42090.10132595203423464No Hit
GATGGG42030.10118151019241821No Hit
GGGCCG41870.10079633194757436No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)