FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7922054
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG901361.1377857308218298No Hit
TGGGGG388540.49045361215664524No Hit
GGGGTG357000.4506407050494733No Hit
GTGGGG351770.4440388818354432No Hit
GGGGGT342060.43178195957765503No Hit
GGGCGG340260.4295098215690022No Hit
GGGTGG329000.41529633602598515No Hit
GGTGGG326080.41161042325639285No Hit
CGGGGG310500.3919438064926091No Hit
GGCGGG269950.34075758635323616No Hit
GGGGGA268960.3395079104484771No Hit
GCGGGG267340.3374629862406896No Hit
GGGGGC265440.3350646183426672No Hit
AGGGGG263180.33221182284291423No Hit
GGGGAG259850.32800836752690654No Hit
GAGGGG246580.31125766120756054No Hit
GGGAGG237370.29963188839662036No Hit
GGAGGG231040.29164153639952467No Hit
GGGGCG229450.289634481158548No Hit
TTGGGG173460.21895836610050876No Hit
GGGGTT168160.21226818196391997No Hit
GTGTGG167250.2111194899706566No Hit
GGTTGG163820.2067898047652793No Hit
TGGGTG154460.1949746871202847No Hit
TGTGGG152670.19271517210056888No Hit
TGGTGG152200.19212189162053175No Hit
GTGGGT151640.19141500424006197No Hit
GGTGGT151190.19084696973789878No Hit
GGTGTG149230.18837286390625463No Hit
GGGTTG148930.18799417423814582No Hit
GTTGGG147870.18665613741082804No Hit
GGGTGT146270.18463645918091445No Hit
GGGGTC145130.183197438442101No Hit
TCGGGG142960.18045824984278067No Hit
TGGGGT140620.17750447043153203No Hit
GTCGGG140420.17725201065279284No Hit
CTGGGG136760.17263199670186544No Hit
GGCCGG136720.1725815047461176No Hit
TGGCGG136540.17235429094525231No Hit
CCGGGG127610.161081961824547No Hit
GGGGTA126880.16016048363214894No Hit
GTGGTG126770.16002163075384238No Hit
CGGTGG124930.1576990007894417No Hit
GCGGGT123570.15598227429401518No Hit
ATGGGG123320.15566669957059115No Hit
GGGCGT122180.1542276788317777No Hit
CGTGGG122110.154139317909219No Hit
GTGCGG122040.15405095698666027No Hit
GCGTGG121080.15283915004871212No Hit
CGGGTG119990.15146324425458346No Hit
GTAGGG119640.15102143964178988No Hit
GCGGTG118410.14946881200254378No Hit
AGGGTG117750.1486356947327044No Hit
GGGCTG117660.1485220878322718No Hit
GAGGTG116450.1469947061708996No Hit
CGGGGT115640.14597224406700585No Hit
GGCTGG115230.1454547015205905No Hit
GGCGGT115120.14531584864228392No Hit
GGTCGG114980.14513912679716648No Hit
GGTGAG113930.1438137129587857No Hit
ACGGGG113540.14332141639024426No Hit
GGGTGC112660.14221059336379177No Hit
TGGGGC111980.14135223011607848No Hit
GGGATG111890.14123862321564584No Hit
TGCGGG111860.14120075424883496No Hit
GCCGGG111590.14085993354753704No Hit
GCTGGG111340.14054435882411304No Hit
AGGTGG110480.13945878177553447No Hit
GGCGTG110310.13924419096360616No Hit
TAGGGG109760.13854992657207335No Hit
GGGGAT109540.13827222081546023No Hit
GGATGG109310.13798189206991016No Hit
AGTGGG107820.1361010667183031No Hit
GGCAGG107010.13507860461440935No Hit
AAGGGG106870.1349018827692919No Hit
CAGGGG106140.1339804045768938No Hit
GGGTCG106060.13387942066539815No Hit
GGGGAC105830.13358909191984805No Hit
GGGTAG105650.13336187811898279No Hit
AGGGGT104930.13245302291552163No Hit
GGGCAG103950.13121596999969956No Hit
GGGAGT102920.1299158021391927No Hit
GTGAGG102690.1296254733936426No Hit
GGAGTG102480.12936039062596644No Hit
GGTGGA102090.12886809405742503No Hit
TGGGAG102060.12883022509061412No Hit
GGTAGG101900.12862825726762278No Hit
GGGGCT101330.12790874689821602No Hit
GAGGGT101100.12761841815266597No Hit
GTGGGA100150.12641923420365478No Hit
GTGGGC99320.1253715261218871No Hit
GATGGG98960.1249170985201565No Hit
TGGGCG98290.12407135826138019No Hit
CGCGGG98270.12404611228350626No Hit
GGGGAA98190.12394512837201059No Hit
GGAGGT97770.12341496283665826No Hit
TGGGGA97670.12328873294728868No Hit
TGAGGG97310.12283430534555811No Hit
GTGGCG97000.12244299268851236No Hit
CGGCGG96980.12241774671063843No Hit
GAGTGG96950.12237987774382755No Hit
GGGCCG96410.12169823634123171No Hit
AGGCGG96410.12169823634123171No Hit
GGTGGC95650.12073888918202275No Hit
GGACGG95190.12015823169092257No Hit
TGGAGG94840.11971642707812899No Hit
GACGGG94240.11895904774191138No Hit
GGCGGA94150.11884544084147874No Hit
GTGGAG93880.11850462014018082No Hit
GCAGGG92840.11719182929073697No Hit
GCGCGG92660.11696461548987169No Hit
TGGGTT92630.1169267465230608No Hit
GGGTGA92610.1169015005451869No Hit
GGGCGC91230.1151595280718864No Hit
AGCGGG90960.11481870737058848No Hit
GGAAGG90390.11409919700118176No Hit
GGTGCG89960.1135564084768925No Hit
GAAGGG88690.11195328888189855No Hit
CGGGGA88360.11153673024697887No Hit
AGGGAG87230.1101103324971024No Hit
GTGGTT86850.10963065891749792No Hit
GCGAGG86240.10886065659234336No Hit
AGGGGA86060.10863344279147806No Hit
CGAGGG85920.10845672094636062No Hit
AGGGGC85420.10782557149951262No Hit
GGTGTT85020.10732065194203422No Hit
TTTGGG84890.10715655308585374No Hit
GGGAAG84650.1068536013513667No Hit
CGGGGC84390.10652540363900576No Hit
TTGGGT83820.10580589326959902No Hit
TGTTGG83660.10560392544660765No Hit
GCGGGC83410.10528835072318365No Hit
GAGGAG82660.10434162655291167No Hit
GGGGCC81680.10310457363708957No Hit
GGCGCG81680.10310457363708957No Hit
TTGTGG81480.10285211385835037No Hit
GCGGGA81440.10280162190260253No Hit
CGGGCG81320.102650146035359No Hit
GGCGGC81300.10262490005748509No Hit
TGGTTG81000.1022462103893763No Hit
GAGGGC80570.10170342186508702No Hit
GCGGAG80390.10147620806422172No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)