FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12821966
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG387010.3018335877664939No Hit
GTGGGG249830.19484531467327243No Hit
GGTGGG238100.18569695162192756No Hit
GGGGTG235560.18371597616153404No Hit
AGGGGG228040.1778510409402115No Hit
GGGTGG223060.17396708117928247No Hit
TGGGGG198020.1544380947508362No Hit
GCGGGG183490.14310597922346696No Hit
GGGGAG179120.13969776553767183No Hit
GGCGGG178410.13914402830267997No Hit
GGGGGT176700.13781037946910793No Hit
GAGGGG174240.13589179693660083No Hit
GGGGGC170860.13325569573340001No Hit
GGGGCG163720.12768712691953793No Hit
GTTGGG160310.1250276283683797No Hit
GGAGGG159150.12412293091402676No Hit
CGGGGG158860.12389675655043852No Hit
GGGGGA156070.12172080319039999No Hit
GGGCGG156000.12166620937849937No Hit
GGGAGG150010.11699453890300442No Hit
TGTGGG148650.11593385912893545No Hit
TTGGGG148620.11591046178097805No Hit
GGGTTG146980.11463140675930664No Hit
GTGTGG144550.11273622157475693No Hit
GGTGGT143600.11199530555610583No Hit
GTGGGT139160.10853249805841009No Hit
GTGGTG139080.10847010513052367No Hit
AGGTGG138350.10790076966356017No Hit
GGGTAG137880.10753421121222752No Hit
GGTTGG135170.10542065078007537No Hit
GGTGTG134420.1048357170811403No Hit
ATGGGG131990.1029405318965906No Hit
GGGGTA131570.10261296902518693No Hit
TGGGTG130580.1018408565425926No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)