FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11164750
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG435700.3902460870149354No Hit
TGGGGG303320.27167648178418685No Hit
GGGGGT299600.26834456660471573No Hit
GGTGGG297090.26609641953469626No Hit
GGGGTG280950.25164020690118455No Hit
GGGTGG279650.2504758279406167No Hit
GTGGGG245850.22020197496585237No Hit
GGTGGT216290.19372578875478627No Hit
AGGGGG206530.1849839897892922No Hit
GGGTGT205770.18430327593542176No Hit
GGCGGG200650.17971741418303142No Hit
CGGGGG190900.17098457197877248No Hit
GGGCGG190330.17047403658836965No Hit
GGGGGA188400.16874538166998812No Hit
GGGGGC187570.16800197048747173No Hit
GCGGGG185850.1664614075550281No Hit
TGTGGG185000.16570008285004142No Hit
GAGGGG185000.16570008285004142No Hit
GGGGTT184190.1649745851899953No Hit
TTGGGG182680.16362211424348955No Hit
GGTTGG180990.16210842159475133No Hit
TGGGGT178010.1594393067466804No Hit
GGAGGG177480.15896459840121813No Hit
GGGTTG177170.15868693880292886No Hit
GTGGGT175800.15745986251371502No Hit
GGGGCG174810.15657314315143644No Hit
GGGAGG171220.15335766586802213No Hit
GTGGTG169570.15187980026422446No Hit
TGGGTG168930.15130656754517566No Hit
TGGTGG167570.15008844801719698No Hit
GTGTGG164890.14768803600618016No Hit
GGTGTG161830.14494726706822814No Hit
GGGGAG159770.14310217425378982No Hit
GTTGGG158290.1417765735909895No Hit
GGTTGT143590.12861013457533757No Hit
GGCGGT141900.12709644192659933No Hit
GGATGG133130.11924136232338386No Hit
GTTTGG132120.118336729438635No Hit
TAGGGG131760.11801428603417004No Hit
GAGGGT130400.11679616650619136No Hit
GGGAGT130290.11669764213260483No Hit
GGTAGG129140.11566761459056406No Hit
GTTGGT126890.11365234331265814No Hit
GGGGCT126520.11332094314695806No Hit
AGGTGG125300.1122282182762713No Hit
AGTGGG125070.11202221276786314No Hit
TGGTGT124640.11163707203475223No Hit
GGTGAG124510.11152063413869544No Hit
AGGGGT124140.11118923397299535No Hit
TGCGGG123810.11089366085223584No Hit
GGAGGT122670.10987259007143019No Hit
GGTCGG122530.10974719541413824No Hit
CGGGGT122340.10957701695067064No Hit
AGGGTG121660.10896795718668129No Hit
GGGCGT121270.10861864349851094No Hit
GGTTTG119930.10741843749300253No Hit
TGGTTG119860.10735574016435658No Hit
GGGGAT119540.10706912380483216No Hit
GGTGTT119490.10702433999865649No Hit
TCGGGG119220.10678250744530778No Hit
TGTGTG118950.10654067489195906No Hit
TTTGGG118290.10594952865044No Hit
GGGGTA116830.10464184151010994No Hit
TTGGGT116630.1044627062854072No Hit
TGAGGG115050.1030475380102555No Hit
TGGCGG114880.10289527306925816No Hit
GCGGGT114870.10288631630802302No Hit
GTGGGA114700.10273405136702568No Hit
TGTGGT114150.10224142949909314No Hit
GGCGTG114050.10215186188674175No Hit
GGCTGG113380.10155175888398756No Hit
GTCGGG113180.10137262365928482No Hit
TGGAGG112870.10109496406099554No Hit
GTGGGC112420.10069190980541436No Hit
GGGCTG112300.10058442867059271No Hit
TGGGCG111850.10018137441501153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)