FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11384576
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG670580.589025010681118No Hit
TGGGGG353740.3107186424861145No Hit
GGGGTG332850.292369254682827No Hit
GGGGGT327520.2876874817296665No Hit
GTGGGG308620.2710860729464145No Hit
GGGTGG295870.2598867098783477No Hit
GGTGGG291640.2561711564840008No Hit
AGGGGG290840.2554684513503182No Hit
GCGGGG275080.2416251602167705No Hit
CGGGGG268700.23602108677565156No Hit
GAGGGG251590.22099198072901444No Hit
GGGGGC250640.22015751838276632No Hit
GGGGGA247520.21741696836140406No Hit
GGCGGG247450.21735548166220683No Hit
GGGAGG240560.2113034336983652No Hit
GGGGCG235630.20697301331204604No Hit
GGGGAG226260.19874257943378829No Hit
GGGCGG221090.19420134750736434No Hit
GGAGGG216950.19056484844055677No Hit
TGTGGG175380.1540505329315734No Hit
TGGGGT171470.15061606159069957No Hit
GGGTGT171010.15021200613883204No Hit
GGGGTT167830.1474187532324436No Hit
GTGTGG166640.1463734793460907No Hit
GTGGGT166450.1462065868768411No Hit
GGTTGG158460.13918831935418588No Hit
GCAATT157490.1383362893795957No Hit
TGGGTG157430.13828358649456948No Hit
GTGGTG157390.13824845123788534No Hit
GGTGGT154180.13542884688898382No Hit
GTTGGG153880.13516533246385284No Hit
GGGTTG150950.13259167491174023No Hit
TTGGGG149380.13121261608688808No Hit
AGGGTG147080.12919233882755055No Hit
TGGTGG145590.12788355051606665No Hit
GGTCGG144280.12673287085966134No Hit
AGGGGT142520.12518691956555958No Hit
GGTGTG141550.12433488959096939No Hit
GCGTGG139080.12216528749072429No Hit
GGTAGG134960.11854635605225879No Hit
CGGTGG134850.11844973409637742No Hit
GCGGGT134670.11829162544129883No Hit
CGGGGT134180.11786121854691822No Hit
GGGTCG131090.11514701996806907No Hit
GGGGTA130190.11435647669267611No Hit
GGGCTG129590.11382944784241417No Hit
CGGGTG129020.11332877043466529No Hit
GGTGGC128740.11308282363787638No Hit
GAGTGG128630.11298620168199501No Hit
GTGGGA128170.1125821462301275No Hit
GGGGCT127930.11237133469002272No Hit
TAGGGG127850.11230106417665445No Hit
TGGCGG127110.11165106192799802No Hit
GGGCGT126690.11128214173281464No Hit
GCGGTG126530.11114160070607812No Hit
GGTGGA126240.11088687009511818No Hit
TCGGGG125780.11048281464325065No Hit
AGGTGG125300.11006119156304107No Hit
ATGGGG125230.10999970486384385No Hit
GAGGTG125160.10993821816464662No Hit
GGGATG124980.10978010950956803No Hit
GTGGCG124840.10965713611117357No Hit
GGGTAG124560.10941118931438465No Hit
GGGGAT123950.10887537664995164No Hit
GGCGGT123400.10839226687054485No Hit
TGGGGC122020.10718010051494233No Hit
CTGGGG122020.10718010051494233No Hit
TGGTTG121650.1068550993906141No Hit
GAGGGT121570.10678482887724583No Hit
AGGGCG121040.10631928672618111No Hit
GGGTGC120830.1061348266285894No Hit
TGGGCG120320.10568685210586674No Hit
GGCTGG120290.10566050066335365No Hit
TGGGGA120140.10552874345078815No Hit
GTGAGG119700.10514225562726272No Hit
TGCGGG119490.10495779552967101No Hit
TGAGGG119170.10467671347619796No Hit
AGTGGG118940.10447468575026421No Hit
GCGCGG118540.1041233331834229No Hit
TGGAGG118410.10400914359919948No Hit
TGGGAG118280.10389495401497606No Hit
GTGGGC118000.10364900721818714No Hit
CGTGGG117510.10321860032380653No Hit
GGGTGA116390.10223481313665085No Hit
GCCGGG116190.10205913685323019No Hit
GGCCGG116080.10196251489734884No Hit
GTGCGG115890.10179562242809923No Hit
CCGGGG115690.10161994614467855No Hit
GTGGAG115640.10157602707382338No Hit
GGGGTC115450.10140913460457376No Hit
GGGAGT115450.10140913460457376No Hit
CGGGGC115000.1010138629668773No Hit
GTAGGG114910.100934808639338No Hit
AGGCGG114840.10087332194014076No Hit
CGGGCG114670.10072399709923321No Hit
GGGGCC114550.10061859132918083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)