FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483389

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483389
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18584252
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1582880.8517318856847185No Hit
GGGGGT715930.38523476758709474No Hit
GGGGTG630870.33946483291337204No Hit
GCGGGG610200.328342512789861No Hit
TGGGGG604510.3252807807384446No Hit
GTGGGG595620.320497160714351No Hit
GGGTGG593980.31961469312835405No Hit
GGGGCG578040.3110375386644563No Hit
GGGGGC570580.30702338732815293No Hit
GGTGGG570370.30691038842994595No Hit
GAGGGG557030.29973226794384833No Hit
GGGCGG555790.299065036354436No Hit
CGGGGG549250.2955459278102772No Hit
GGCGGG541450.2913488258768768No Hit
GGGGGA506640.27261791327409896No Hit
GGGAGG506340.27245648627666047No Hit
GGGGAG500540.2693355643261833No Hit
AGGGGG491240.2643313274055905No Hit
GGAGGG489430.26335738452104507No Hit
GGGGTT315310.16966515520775333No Hit
GGTGTG306270.16480082168494056No Hit
GTGGTG300710.16180904133241414No Hit
GGTGGT299190.1609911445453925No Hit
GGGTTG293300.15782179449568376No Hit
GTGGGT289340.15569095812949588No Hit
GGGTGT283430.1525108462799579No Hit
GGCGGT281250.1513378100985716No Hit
TGGGTG279980.15065443580941543No Hit
GGGGTA278530.1498742053217961No Hit
TTGGGG276920.14900788043554297No Hit
TGGGGT273860.14736132506167052No Hit
GGGCGT271150.1459031011848096No Hit
GGTCGG270860.14574705508728572No Hit
CGGGGT270310.14545110559198185No Hit
GCGGGT267030.14368617041998785No Hit
GTTGGG266550.14342788722408628No Hit
GTGGGC261240.14057062936942527No Hit
GTGCGG260360.14009711017693907No Hit
TCGGGG260220.14002177757813444No Hit
TGTGGG257990.1388218368971751No Hit
GGGGCT257830.13873574249854123No Hit
GGTTGG257660.13864426719999276No Hit
GTGGCG255090.1372613759219365No Hit
GGCGGC253890.13661566793218258No Hit
GGCGTG252880.1360721970408064No Hit
CGGGTG252580.1359107700433679No Hit
TGGGCG252550.13589462734362404No Hit
GAGGGT250990.13505520695694398No Hit
GTGTGG250420.13474849566181085No Hit
GAGGTG250110.13458168776445778No Hit
GGGGAT248400.13366155387905845No Hit
GGCCGG247920.13340327068315688No Hit
GGGCCG247330.13308579758819458No Hit
GGTGGA247100.1329620368901584No Hit
GCGGGC246670.1327306581938299No Hit
GGGGTC243740.13115405451884746No Hit
CGGCGG241430.12991106663857122No Hit
CGGGGC240500.12941064294651192No Hit
GCCGGG238930.12856584165991725No Hit
GTCGGG236470.1272421402809217No Hit
CTGGGG236010.1269946188848494No Hit
GTGGAG235650.12680090648792322No Hit
AGGGGT234790.12633814909526625No Hit
TGGTGG234380.126117532198767No Hit
GGGTCG234000.12591305800201158No Hit
GGGGCA233730.12576777370431697No Hit
GTGGGA233370.1255740613073908No Hit
GGAGGT232950.1253480635109769No Hit
TGAGGG232780.12525658821242847No Hit
TGCGGG232710.12521892191302614No Hit
GCTGGG231290.1244548341251507No Hit
GATGGG230330.12393826773334755No Hit
GGCTGG230210.12387369693437218No Hit
GCGGTG230190.12386293513454295No Hit
GGTGGC229490.12348627214051984No Hit
GGGACG228190.12278675515161976No Hit
TGGCGG227570.12245313935691358No Hit
GGGTGC226690.1219796201644274No Hit
ATGGGG226660.12196347746468354No Hit
CGGTGG225180.12116710427732039No Hit
GGTGCG225100.12112405707800347No Hit
GGTGAG224770.12094648738082114No Hit
TGGGGC224690.1209034401815042No Hit
GGGGCC224240.12066129968534649No Hit
GAGGGC223550.120290017591238No Hit
GAGGCG223120.12005863889490952No Hit
GGGATG222890.11993487819687335No Hit
GGGTAG222420.1196819759008864No Hit
CCGGGG222390.11966583320114255No Hit
AGGCGG222140.11953131070327717No Hit
GGACGG221610.11924612300780252No Hit
AGGTGG221470.1191707904089979No Hit
GCGTGG221410.1191385050095102No Hit
GTGAGG221100.11897169711215712No Hit
TAGGGG220590.11869727121651169No Hit
GCGGCG220570.11868650941668248No Hit
GGGAGT220070.11841746442095168No Hit
GCAGGG219780.11826141832342782No Hit
GGAGTG219090.11789013622931932No Hit
CGTGGG218740.11770180473230776No Hit
GGGCAG217610.11709376304195618No Hit
GTAGGG217420.11699152594357846No Hit
AAGGGG217220.11688390794528615No Hit
GCGAGG215220.11580772796236298No Hit
GGGCGC213940.11511897277329214No Hit
GAGCGG213120.11467773898029363No Hit
GGGCGA212760.11448402658336745No Hit
GGTAGG212260.11421498158763668No Hit
CGGGGA211890.11401588829079588No Hit
GGGTGA211690.11390827029250357No Hit
GGCGCG210500.11326794320266427No Hit
GAGAGG209980.11298813640710426No Hit
GGGCTG209120.1125253790144473No Hit
GCGCGG208560.11222404861922879No Hit
CGGGAG208270.11206800252170493No Hit
GACGGG208200.11203033622230263No Hit
CAGGGG206400.11106177423767177No Hit
TGGGGA205720.1106958730434779No Hit
TGGGAG205680.11067434944381943No Hit
AGTGGG205100.1103622572487717No Hit
GGCAGG204690.11014164035227246No Hit
GGCGAG204590.11008783135312628No Hit
GGGGAA203950.10974345375859088No Hit
AGGGTG203280.1093829334643116No Hit
ACGGGG203030.1092484109664462No Hit
GAGTGG201300.10831751528121768No Hit
CGGGCG201000.10815608828377919No Hit
GGCGGA200370.10781709158915839No Hit
GGATGG195980.10545487652664201No Hit
CGCGGG195840.10537954392783741No Hit
GGAAGG195730.10532035402877662No Hit
GAGGAG195690.10529883042911815No Hit
AGCGGG192910.10380294025285496No Hit
GGGGAC192480.10357156155652646No Hit
GGGAAG192160.10339937275925876No Hit
AGGGGC191730.10316799406293027No Hit
AGGGCG191520.10305499516472334No Hit
GAAGGG191090.10282361646839486No Hit
TGGAGG191050.10280209286873639No Hit
GAGGGA189550.101994957881544No Hit
GGAGGC187890.10110172849571777No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)