FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10682407
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG240960.22556714043941595No Hit
TGGGGG168430.1576704576037966No Hit
GGGTGG165760.15517102091317062No Hit
GTGGGG164140.15365450876380202No Hit
GGTGGG160180.14994747906534547No Hit
GGGGTG159380.1491985841767684No Hit
GGGGGT153400.14360059488465476No Hit
GGGAGG128920.12068441129419614No Hit
CGGGGG127910.1197389314973676No Hit
TGTGGG125290.11728630073727765No Hit
AGGGGG125010.11702418752627568No Hit
TTGGGG124750.11678079668748813No Hit
GGTGTG124660.1166965460125232No Hit
GGGGGA122340.11452475083564967No Hit
GTTGGG120670.11296143275574502No Hit
GGTTTG119420.11179128449234335No Hit
GAGGGG119150.11153853246744859No Hit
GGTGGT118500.1109300553704797No Hit
GCGGGG116440.10900165103239373No Hit
GGGCGG116130.10871145426307012No Hit
GGGTGT115750.108355729190996No Hit
TGGGTG115490.10811233835220846No Hit
TGGTGG115220.10785958632731368No Hit
GTGTGG115080.1077285297218127No Hit
GGGTTG114620.10729791516088089No Hit
GGAGGG113160.10593118198922771No Hit
GGTTGG112240.10506995286736406No Hit
GGCGGG112230.10506059168125687No Hit
GGGGTT111600.1044708369565024No Hit
GGGGTA110920.10383427630121188No Hit
GTGGTG107600.10072636251361702No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)