FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4890006
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT453350.9270949769795783No Hit
GGGGGG205690.4206334307156269No Hit
TGGGGG141770.28991784468158116No Hit
GGTGGG118570.24247414011352952No Hit
GGGGGT117040.23934530959675715No Hit
GTGGGG115830.23687087500506135No Hit
GGGTGG107330.21948848324521483No Hit
GGGGTG100430.2053780711107512No Hit
GAGGGG99380.20323083448159368No Hit
CGGGGG97310.1989977108412546No Hit
TGGGGT94270.19278094955302713No Hit
GGGGAG87310.17854783818261163No Hit
GCGGGG86430.17674824938865105No Hit
AGGGGG85820.17550080715647384No Hit
GTTGGG85770.17539855779318062No Hit
GGGGCG85340.17451921326885897No Hit
TTGGGG84550.1729036733288262No Hit
GGAGGG84170.17212657816779775No Hit
TGGTGG82980.16969304332141924No Hit
TGGGTG82700.16912044688697725No Hit
GGGGGC82480.16867054968848708No Hit
TGTGGG80940.16552126929905606No Hit
GGGGGA79590.16276053649013927No Hit
GGCGGG77620.1587319115763866No Hit
GGTTGG77380.1582411146325792No Hit
GTGGTG76030.1554803818236624No Hit
GGGGTT75680.15476463628060988No Hit
GGGTGT74820.1530059472319666No Hit
GGGCGG74070.15147220678256837No Hit
GGTGTG73010.14930452028075222No Hit
GGGTTG72210.14766853046806078No Hit
GGGAGG71640.14650288772651812No Hit
GTGGGT69850.14284236052062102No Hit
GGGCTG69480.14208571523225125No Hit
TCGGGG67640.13832293866306095No Hit
GGTGGT66260.13550085623616823No Hit
GGGGCT63050.12893644711274382No Hit
GTGTGG62770.12836385067830183No Hit
AGGGGT59640.12196304053614657No Hit
GTGTTG58370.11936590670849892No Hit
GTTGGT57040.1166460736448994No Hit
CGGTGG56250.11503053370486663No Hit
GTGGGC56230.11498963395954934No Hit
GGGTTT56170.11486693472359748No Hit
GGGTAG55870.1142534385438382No Hit
TGGGTT55520.11353769300078567No Hit
ATGGGG55170.11282194745773318No Hit
GGTAGG54940.1123516003865844No Hit
TGCGGG54580.11161540497087324No Hit
TGGGCG54400.11124730726301767No Hit
GTAGGG54380.11120640751770038No Hit
GGGATG54190.11081785993718617No Hit
GGTGGC54040.11051111184730653No Hit
GCGGGT53950.11032706299337874No Hit
AGGTGG52500.1073618314578755No Hit
TGGGGA52210.10676878515077487No Hit
GGATGG52200.10674833527811622No Hit
CGGGGT51820.10597124011708779No Hit
GGGGTA51170.104641998394276No Hit
TGGGAG50790.10386490323324757No Hit
GCTGGG50610.10349680552539199No Hit
GGGGCA50560.10339455616209879No Hit
AGGGTG50500.10327185692614693No Hit
GGGTGC50420.10310825794487778No Hit
GGCTGG49760.10175856634940733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)