FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483395

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483395
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6092341
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG268180.4401920378389851No Hit
GGCGGG136580.2241831177867424No Hit
AGGGGG131650.21609099031062118No Hit
GGGTGG131590.21599250600056694No Hit
GGGCGG131540.21591043574218843No Hit
GGGGCG128690.21123243101461328No Hit
GGGGGT124640.20458474008595381No Hit
GGAGGG120920.19847871286259255No Hit
GCGGGG118830.19504817606237076No Hit
GGGGTG115450.18950022659598337No Hit
GAGGGG114760.18836765703035993No Hit
GGGGGA113150.18572499471057186No Hit
TGGGGG112640.18488787807511103No Hit
GGGGGC112120.1840343473879745No Hit
GTGGGG111120.18239294222040428No Hit
CGGGGG110570.18149016937824064No Hit
GGTGGG110490.18135885696483503No Hit
GGGGAG105880.17379197914233624No Hit
GGGAGG103760.17031220018708734No Hit
GGGTAG82470.1353666841695171No Hit
GGGTTG79220.13003211737491385No Hit
GGCCGG78770.12929348504950725No Hit
CCGGGG74450.12220261472560383No Hit
CGGGGT74190.12177584938203558No Hit
GGGCAG73980.12143115429684583No Hit
GGCAGG73340.12038065498960086No Hit
AGGGTG72440.11890339033878766No Hit
CAGGGG71850.11793496128992124No Hit
GGAGTG70240.11529229897013316No Hit
GGGCCG69820.11460290879975366No Hit
GGGTGA69450.11399558888775267No Hit
GGGGCC69190.1135688235441844No Hit
GGGTCG68770.11287943337380492No Hit
GGGAAG67970.11156630923974872No Hit
TGGGGC67650.11104105958612626No Hit
TTGGGG67540.11086050501769353No Hit
GTCGGG67420.11066353639758508No Hit
GTGGTG66900.10981000571044858No Hit
CTGGGG66560.1092519279534747No Hit
GGAGGC66040.10839839726633818No Hit
AGGTGG65910.10818501459455404No Hit
GGTGTG65820.10803728812947273No Hit
GCGGGT65740.1079059757160671No Hit
GGCTGG65420.10738072606244463No Hit
GGGGTT64980.10665850778871373No Hit
GGGGTA64880.10649436727195671No Hit
GTGGGT64600.10603477382503705No Hit
TGGGTG64190.10536179770633325No Hit
GGCGCG63420.10409791572730416No Hit
AAGGGG62860.10317872883346484No Hit
GAGCGG62760.10301458831670782No Hit
GGGCGC62560.10268630728319375No Hit
GGTCGG62260.10219388573292269No Hit
GGTTGG62220.10212822952621989No Hit
ATGGGG62140.10199691711281426No Hit
GGTGGT62110.10194767495778716No Hit
GTGTGG61790.10142242530416469No Hit
GTAGGG61160.10038834004859544No Hit
GGGCTG61150.10037192599691974No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)