FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8738094
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG434390.49712214128161136No Hit
GGGCGG250940.2871793322433931No Hit
CGGGGG217100.24845235127935222No Hit
GGGGGT213040.2438060290951322No Hit
AGGGGG210730.2411624319903173No Hit
TGGGGG206500.23632155936981225No Hit
GGCGGG203210.2325564362205305No Hit
GGTGGG200910.2299242832590265No Hit
GGGGCG196350.22470575390926215No Hit
GCGGGG188270.2154588861140656No Hit
GTGGGG181240.20741365336651219No Hit
GGGGGA180510.20657823090481747No Hit
GAGGGG179190.20506760398778043No Hit
GGGGGC174540.19974607734821806No Hit
GGGTGG173850.19895643145976688No Hit
GGGAGG171430.19618694877853224No Hit
GGGGTG165440.18933190693531105No Hit
GGAGGG150880.1726692342746599No Hit
GGGGAG145820.16687849775935118No Hit
GGTTGG130790.1496779503630883No Hit
GGCCGG116380.13318693985210048No Hit
GGGCCG110810.12681255202793654No Hit
GGAGGT108130.12374552162061887No Hit
GGGGCA105210.12040383177383994No Hit
TGGGGT104130.11916786429626415No Hit
GCCGGG102760.11760001666267267No Hit
GTGCGG102600.11741691036969847No Hit
GGGACG102590.11740546622638758No Hit
GGCAGG102510.1173139130799005No Hit
CCGGGG100610.115139525850832No Hit
GGGTTG99820.11423543852927195No Hit
CGCGGG98460.11267903503899133No Hit
GGTCGG97210.1112485171251305No Hit
ATGGGG97050.1110654108321563No Hit
TGTGGG97030.11104252254553454No Hit
TGGCGG96470.11040165052012486No Hit
GGGGCT96220.11011554693735269No Hit
CGGCGG95820.10965778120491723No Hit
TTGGGG95690.10950900734187569No Hit
CGTGGG95620.1094288983386995No Hit
GGGTAG95070.10879947045660072No Hit
GGGTGT94810.10850192273051766No Hit
GGTGGA94040.10762072369557937No Hit
ACGGGG92870.10628175892820563No Hit
GGACGG92760.10615587335178586No Hit
TGCGGG92710.10609865263523142No Hit
GCGGGT92270.1055951103295524No Hit
GTCGGG91600.104828352727723No Hit
GGGCAG91580.10480546444110123No Hit
AAGGGG90950.10408448341251537No Hit
GGGGTA90750.10385560054629761No Hit
TGGGTG90410.10346649967372748No Hit
GGGCGT90110.10312317537440087No Hit
TGGAGG89550.10248230334899121No Hit
CGGGGT89460.10237930605919324No Hit
CGGGCG89170.10204742590317752No Hit
GGGGTT89140.10201309347324485No Hit
GGCTGG88110.10083434671222351No Hit
GCGAGG88060.10077712599566907No Hit
AGGGGT87860.10054824312945133No Hit
GAGGGT87810.1004910224128969No Hit
GTAGGG87450.10007903325370499No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)