FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14043634
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG429450.30579691837597023No Hit
GGGGGT264620.18842701255244904No Hit
GGGGTG247960.1765639862161033No Hit
GGTGGG247610.1763147629737431No Hit
GGGGGC242160.17243400105699136No Hit
GGGTGG240620.1713374187906065No Hit
GTGGGG227250.16181709093244667No Hit
GGGCGG223310.15901154928987754No Hit
TGGGGG221250.15754469249198605No Hit
GCGGGG218830.1558214917876669No Hit
AGGGGG205190.1461089059996864No Hit
CGGGGG201390.14340305365406134No Hit
GAGGGG200760.14295445181781297No Hit
GGGGCG194100.13821208954890166No Hit
GGAGGG188580.13428148298367787No Hit
GGGGAG181040.12891250227683235No Hit
GTGTGG177470.12637042520475825No Hit
GGGAGG174950.12457601785976478No Hit
GGGGGA174780.12445496657061839No Hit
GGCGGG172750.12300947176492921No Hit
GTGGGT167410.11920703715291925No Hit
GGGGTT163700.11656527078390108No Hit
GGTTGG158430.11281268082036315No Hit
GGTGTG156810.11165913324143878No Hit
GGGTGT153690.10943748605239925No Hit
GTTGGG152340.10847619640329562No Hit
GGGTTG152080.1082910591375423No Hit
GGTGGT147130.1047663304241623No Hit
TGGGGT143760.10236666663343691No Hit
TGTGGG143530.1022028913598859No Hit
GGGGTC143190.10196078878159313No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)