FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7104440
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG214670.30216315430913626No Hit
GGGCGG135230.1903457556119835No Hit
GGGGGT124870.17576332546970627No Hit
GGGGTG120180.16916181993232401No Hit
GGGTGG119130.16768387093141754No Hit
GGGGCG113970.16042080726982No Hit
GGCGGG113440.1596747949169815No Hit
GGTGGG111840.15742268215369543No Hit
GCGGGG105670.14873797231027358No Hit
GGAGGG105300.14821717123376368No Hit
GTGGGG104560.14717556908074386No Hit
CGGGGG103850.1461761940420357No Hit
GGGGGC103210.14527534893672125No Hit
TGGGGG100020.14078519911491968No Hit
AGGGGG97380.13706921305549769No Hit
GGGAGG95430.1343244506252428No Hit
GGGGAG94200.13259313893846664No Hit
GAGGGG92210.12979207368912962No Hit
GGGGGA91990.12948240818417778No Hit
GGGCCG85960.12099475820754346No Hit
GGGGTT82280.11581489885198552No Hit
GGTCGG81410.11459031253694874No Hit
GGCCGG80460.11325312058374762No Hit
GGGCAG77350.10887557640011035No Hit
GGGTTG76730.108002882704337No Hit
GGGGTA75990.10696128055131719No Hit
TGGTGG74270.10454025933078469No Hit
GGTTGG73820.10390685261611049No Hit
GCAGGG72630.1022318437484165No Hit
CGCGGG72090.10147175569080744No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)