FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21941465
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1552540.7075826522978297No Hit
CGGGGG680590.31018439288351984No Hit
TGGGGG655370.2986901740608478No Hit
GCGGGG652360.29731834223466846No Hit
GGGTGG649010.2957915526606815No Hit
GGCGGG640190.2917717663793188No Hit
GTGGGG638860.2911656081305419No Hit
GGGCGG637010.29032245567923565No Hit
GGGGCG624370.284561673525446No Hit
GGGGTG624250.28450698255563156No Hit
GGGGGT621870.2834222783209781No Hit
GAGGGG571040.26025609502373703No Hit
AGGGGG570860.2601740585690153No Hit
GGGGAG544550.2481830634371953No Hit
GGGGGC534420.24356623406869138No Hit
GGTGGG519090.23657946267489433No Hit
GGAGGG510450.2326417128482533No Hit
GGGAGG508330.23167550571486453No Hit
GGGGGA422700.19264894117143044No Hit
GTGTGG341460.15562315460704196No Hit
GGGCCG337340.1537454313100789No Hit
GTGGTG328000.14948865082618684No Hit
GGGTAG327960.14947042050291537No Hit
TCGGGG317760.1448216880686864No Hit
GTTGGG314040.14312626800443817No Hit
GGGTGT313810.14302144364562713No Hit
TTGGGG311920.1421600608710494No Hit
GGGTTG311630.14202789102733113No Hit
GGGGTT310180.14136704180873974No Hit
GGGTCG305530.13924776672842948No Hit
GTGGGT305160.13907913623816823No Hit
GGGCTG301680.13749309811354893No Hit
GTGGCG300170.13680490341005033No Hit
CCGGGG298190.13590250240811175No Hit
GGTGTG297900.13577033256439347No Hit
TGGTGG297540.1356062596549501No Hit
CGCGGG297380.13553333836186415No Hit
GGGCGT295970.13489071946654427No Hit
GCGGGT295590.13471753139546516No Hit
AGGGTG293800.13390172442906614No Hit
GGCTGG293760.13388349410579467No Hit
GGGGCT291680.13293551729567737No Hit
AGGCGG290680.13247975921389024No Hit
CGGCGG288840.13164116434340187No Hit
GGCGGT287110.1308527028619101No Hit
GTCGGG287000.13080256947291352No Hit
GGTCGG286730.13067951479083095No Hit
GCCGGG286170.13042429026503016No Hit
AGGTGG285600.1301645081584115No Hit
AGGGCG284750.12977711378889242No Hit
GGCCGG281490.12829134244226628No Hit
AGGGGT281350.12822753631081607No Hit
GGTGGT281220.12816828776018374No Hit
CGGTGG281060.1280953664670978No Hit
AGCGGG280900.12802244517401185No Hit
TGTGGG279670.12746186273341367No Hit
GTGAGG277830.12662326786292527No Hit
CGGGGT277130.1263042372056743No Hit
CGGGTG276610.12606724300314498No Hit
ACGGGG276380.1259624186443339No Hit
GAGGGT274830.12525599361756382No Hit
GCTGGG273520.12465895053042264No Hit
GCGGTG273340.12457691407570097No Hit
TGGGGT272990.12441739874707546No Hit
GGCGCG272340.12412115599391381No Hit
GGCGTG270800.1234192885479616No Hit
TAGGGG270600.12332813693160416No Hit
GATGGG270590.12332357935078628No Hit
CAGGGG268600.12241662076802984No Hit
GTAGGG267470.12190161413561035No Hit
GCGCGG263230.11996919986883284No Hit
CTGGGG263060.11989172099492901No Hit
GCGTGG262970.11985070276756815No Hit
GGGATG262300.11954534485277078No Hit
AGTGGG261310.11909414435180149No Hit
CGTGGG260120.11855179223447478No Hit
ATGGGG259650.1183375859360348No Hit
GGTTGG258430.11778156107625447No Hit
AAGGGG258310.11772687010644003No Hit
GGGGCC257940.11755823961617877No Hit
GGGCAG257280.11725743928219926No Hit
GCGGCG257100.11717540282747757No Hit
TGGGTG256750.11701588749885206No Hit
GAGGTG254930.11618640778999943No Hit
CGGGCG254370.11593118326419863No Hit
GGCAGG253950.11573976486984802No Hit
GGGGCA253540.11555290405631528No Hit
GAGGCG252940.115279449207243No Hit
TGGCGG252550.11510170355534602No Hit
TGGGGC251470.11460948482701588No Hit
GGGACG251150.11446364224084399No Hit
GTGCGG251080.1144317391751189No Hit
TGGGCG249410.11367062317853434No Hit
GGCGGC249390.11366150801689859No Hit
GGGTGC248980.11347464720336588No Hit
CGGGGC246520.11235348232216946No Hit
GAGTGG245670.1119660879526504No Hit
GCAGGG245230.11176555439666404No Hit
GCGGGC245200.11175188165421042No Hit
GGGGTC244430.11140094793123431No Hit
TGCGGG244170.11128245082996965No Hit
GCGAGG242230.11039828015130257No Hit
GACGGG241990.11028889821167365No Hit
GGGGAT241960.11027522546922003No Hit
TGAGGG239870.10932269107828488No Hit
GGTGAG238360.10863449637478627No Hit
GGTGGC238180.1085524599200646No Hit
GTGGAG238010.10847498104616077No Hit
GGCGAG237680.108324580879171No Hit
GGTGCG237240.10812404732318467No Hit
AGGAGG236230.10766373166057963No Hit
GCGGAG230400.10500666204376052No Hit
CGGGAG229780.1047240920330525No Hit
GTGGGC229720.10469674654814526No Hit
GGGCGC229660.10466940106323804No Hit
AGAGGG227590.10372598183393864No Hit
CGGAGG227580.10372142425312074No Hit
AGGGAG226980.10344796940404846No Hit
GGAGTG226930.10342518149995909No Hit
GGGAAG225530.10278712018545706No Hit
CGAGGG224880.10249087743229542No Hit
GAGCGG224760.10243618646248098No Hit
GGAAGG223320.10177989482470746No Hit
GGGGTA222170.10125577303065224No Hit
GAGAGG219900.10022120218499539No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)