FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16147963
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1164090.7208896874485036No Hit
CGGGGG562170.34813678976103674No Hit
GGCGGG534830.3312058616928959No Hit
GCGGGG532610.3298310752879481No Hit
AGGGGG471280.2918510526683768No Hit
GGGGGC465820.2884698212399917No Hit
TGGGGG445480.2758738052595241No Hit
GTGGGG440570.272833174066599No Hit
GGGCGG437720.2710682455737606No Hit
GAGGGG435360.2696067609270594No Hit
GGGTGG432980.26813289081725045No Hit
GGGGTG431110.2669748500166863No Hit
GGGGCG428440.26532139069181665No Hit
GGGGGT420410.2603486272541001No Hit
GGGAGG419910.2600389906764092No Hit
GGTGGG408560.2530102403628247No Hit
GGGGGA383570.2375346042098313No Hit
GGGGAG375990.23284051369203657No Hit
GGAGGG370490.22943451133743617No Hit
GGCAGG262590.16261493787173034No Hit
GGCCGG256300.15871970972437824No Hit
AAGGGG252270.15622403890818923No Hit
GGGCCG250420.15507838357073273No Hit
CAGGGG241070.14928817956791207No Hit
CGGTGG239680.14842738988193124No Hit
AGGCGG238090.14744274556487402No Hit
TAGGGG234210.1450399657219923No Hit
GCGTGG230700.14286631694660187No Hit
AGGGGT230360.14265576407377203No Hit
GGGGCA227720.14102088294356385No Hit
CGCGGG226600.14032729700953614No Hit
AGGTGG221970.13746006230011798No Hit
GCCGGG221720.1373052440112725No Hit
GGGCGC220730.13669216358744443No Hit
CGGGGT219970.1362215159893542No Hit
GGGGCC217780.13486530777906786No Hit
GGTTGG217750.1348467295844064No Hit
CCGGGG216810.13426461281834742No Hit
GTGCGG214650.13292698280272255No Hit
AGCGGG214390.13276597178232327No Hit
GTCGGG214230.13266688807746216No Hit
CGGGGC213760.13237582969443268No Hit
GGCGGC213470.13219624047937192No Hit
AGGGGC213460.1321900477478181No Hit
GGGTCG211790.13115586157833034No Hit
CGGGCG211780.13114966884677653No Hit
AGGAGG209100.12949001679035305No Hit
CGGCGG208830.12932281303839996No Hit
GGCTGG208560.12915560928644684No Hit
ACGGGG208450.12908748923935484No Hit
GACGGG202940.12567529415320064No Hit
GCGGGC201630.12486404631965035No Hit
ATGGGG199640.12363169274044038No Hit
GGGCTG199590.12360072908267129No Hit
AGGGCG199210.12336540528362616No Hit
GCGGTG195670.12117317831357428No Hit
GTGAGG194160.12023807584894763No Hit
GGTAGG193970.12012041394942508No Hit
GCGCGG192840.11942063528384356No Hit
GTGGCG191930.11885709671244603No Hit
GTGGTG191540.11861558018184709No Hit
GCTGGG191090.11833690726192522No Hit
GGTCGG190810.11816351077841832No Hit
GCGAGG190470.11795295790558845No Hit
GGGAGC189690.11746992484439059No Hit
GGCGCG188970.11702404817251562No Hit
GGTGGT188700.11685684442056252No Hit
CGGGGA187800.11629949858071881No Hit
GCGGCG187590.11616945121808862No Hit
GGGCAG187250.11595889834525878No Hit
AGGGTG187080.11585362190884385No Hit
GAGGCG186210.11531485426366161No Hit
AGGGGA185670.1149804467597554No Hit
TGCGGG184460.11423112624174331No Hit
TCGGGG184340.11415681346309749No Hit
GAGTGG184030.11396483878492909No Hit
GGTGCG183420.11358708216014615No Hit
GTGGGC183100.11338891475042394No Hit
TTGGGG182780.11319074734070173No Hit
AGTGGG182320.11290588168922606No Hit
GAGGGC182250.11286253256834933No Hit
GAGCGG181680.11250954686978165No Hit
GCGGGT181230.1122308739498598No Hit
GGGGTT180480.1117664190833234No Hit
TGGGCG180180.11158063713670881No Hit
TGGCGG179030.11086847300801966No Hit
TGGGGT178890.11078177476626619No Hit
GGCGGA178850.11075700384005091No Hit
CTGGGG178840.11075081110849709No Hit
TGGGGC178550.11057122189343635No Hit
GGGTGC178110.11029874170506831No Hit
GGACGG177990.11022442892642248No Hit
GTGTGG177930.11018727253709958No Hit
GGGATG176780.1094751084084104No Hit
GGAAGG176610.10936983197199548No Hit
AGGGAG176530.10932029011956493No Hit
GTGGGT176160.10909115905207362No Hit
GGGCGT175950.10896111168944343No Hit
GGCGAG175830.1088867989107976No Hit
CGTGGG175380.10860812599087576No Hit
GATGGG174730.10820559843987754No Hit
GTAGGG174410.10800743103015532No Hit
GGGTGA174370.10798266010394005No Hit
GGGTGT173790.10762348167381855No Hit
GGGGCT173570.10748724157963455No Hit
GTGGAG172260.10667599374608425No Hit
GTTGGG172190.10663264462520752No Hit
GCAGGG172050.10654594638345406No Hit
GGGACG171760.10636635716839331No Hit
TGGTGG171650.1062982371213013No Hit
GGTGGA171100.10595763688584126No Hit
GGGTAG170200.10540029104599757No Hit
CGGAGG169410.10491106525324587No Hit
GGGGTA168920.10460762140710875No Hit
GGGTTG168860.10457046501778583No Hit
GGGGTC168330.10424225024543343No Hit
GAAGGG167280.10359201343228244No Hit
GGTGGC166570.10315232949196132No Hit
TGTGGG165520.10250209267881033No Hit
CGGGTG164370.10178992855012114No Hit
TGGGAG163350.10115826993163163No Hit
AGAGGG162020.1003346366349737No Hit
GGGCGA161530.10003119278883658No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)