FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483407

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483407
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11716053
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG275400.23506209813151235No Hit
GCAATT243410.2077576808503683No Hit
GGGGTG211160.18023134582952127No Hit
GGGGGT195200.1666090107308323No Hit
GGGTGG178850.15265379902258894No Hit
GTGGGG173000.1476606498792725No Hit
TGGGGG172840.14752408511637835No Hit
GGTGGT164530.14043125274356474No Hit
GGTGGG160130.1366757217639763No Hit
GCGGGG157050.13404685007826442No Hit
GGCGGG151880.129634101177248No Hit
AGGGGG150580.12852451247873323No Hit
GGTGTG150380.12835380652511558No Hit
GGGGTT149350.12747467086398465No Hit
GGGGCG149330.1274576002686229No Hit
GTGTGG144710.12351429274005503No Hit
GGGGGC143650.12260955118588146No Hit
GGGAGG142780.12186698028764464No Hit
GGGCGG140930.12028795021668133No Hit
CGGGGG131270.11204285265694854No Hit
GTGGTG129970.11093326395843377No Hit
TGGGTG127110.1084921688217013No Hit
GAGGGG123410.10533410867977466No Hit
GTGGGT122850.10485613200964523No Hit
TGGTGG122000.10413063170677019No Hit
TGGGGT119650.10212483675176272No Hit
GGGTTG119410.10191998960742155No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)