FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483411

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483411
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20805215
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1609450.773580085569892No Hit
GGGGGT790700.38004894445935794No Hit
GGGTGG778340.374108126255845No Hit
TGGGGG756740.3637261138613564No Hit
GTGGGG714190.34327451074165777No Hit
GGGGTG687720.3305517390711896No Hit
AGGGGG654700.31468071827183713No Hit
GGTGGG653540.31412316575435534No Hit
GCGGGG564460.2713069776015292No Hit
GGAGGG563600.2708936197006376No Hit
GAGGGG562600.2704129709786705No Hit
CGGGGG562210.2702255179771033No Hit
GGGGGA549050.2639001807960168No Hit
GGGAGG545890.26238133083460086No Hit
GGGCGG536640.2579353301564055No Hit
GGCGGG530800.2551283416201178No Hit
GGGGCG517510.24874052010517553No Hit
GGGGAG508340.24433297132473758No Hit
GGGGGC485620.23341263236164583No Hit
GGGTGT436890.20999062014019082No Hit
GGGTTG407860.1960373877414869No Hit
GGGGTT401350.19290836456148133No Hit
GTTGGG389250.18709251502567986No Hit
TGGTGG364930.17540313810744085No Hit
GTGGGT353120.16972667670100983No Hit
GGTGGT341690.16423286180892627No Hit
GTGTGG341290.16404060232013945No Hit
GGGTAG340710.16376182606139855No Hit
GGTGTG335880.16144029273429764No Hit
AGTGGG333550.16032038121211437No Hit
TTGGGG331940.1595465367697474No Hit
GGTTGG330110.15866694960854766No Hit
GTGGTG328380.15783542731954464No Hit
AGGGGT328180.15773929757515123No Hit
TGGGGT326750.15705196990273834No Hit
TGGGTG320090.15385084941443766No Hit
TGTGGG310180.14908762057974406No Hit
GAGGGT306660.14739573707842No Hit
ATGGGG303990.14611240499076794No Hit
GTAGGG301980.14514630105961415No Hit
AGGTGG298090.14327657753116224No Hit
GGGGAT296420.14247389416547726No Hit
GATGGG291870.14028694248052712No Hit
TAGGGG287570.13822015297606874No Hit
GGTAGG285210.13708582199222646No Hit
GGGGTA284870.13692240142675768No Hit
GAGTGG279130.1341634777626667No Hit
GTGAGG275740.1325340785951984No Hit
AAGGGG272530.1309911961976841No Hit
GGGAGT270700.13011160903648436No Hit
GGGTCG270570.13004912470262864No Hit
GAGGTG269460.1295156046212452No Hit
CGTGGG268190.128905180744347No Hit
GTGGAG266310.12800156114704894No Hit
GGCGGT265210.12747284755288518No Hit
CTGGGG263740.12676629393159358No Hit
CGGTGG262340.1260933857208397No Hit
GGGATG261200.12554544617779725No Hit
GCGGGT260470.1251945726107613No Hit
GAAGGG258090.12405062865247969No Hit
AGGGTG257220.12363246426436833No Hit
TGGGAG257100.1235747864177323No Hit
TGAGGG256210.1231470090551816No Hit
GGATGG255620.12286342630922102No Hit
GTCGGG252930.12157048124712963No Hit
GGAGTG252440.12133496337336576No Hit
GCAGGG252000.12112347793570026No Hit
GCTGGG251020.12065244218817253No Hit
TGGCGG250180.1202486972617202No Hit
AGGCGG250130.12022466482562183No Hit
AGAGGG250120.12021985833840217No Hit
GGTGAG248700.11953733715320894No Hit
GTGGCG248280.11933546468998277No Hit
GTGGGA246980.1187106213514256No Hit
CAGGGG246300.11838378022048798No Hit
GGCAGG246110.11829245696331424No Hit
GGAGGT244290.1174176762893342No Hit
GCGTGG243430.11700431838844252No Hit
GGAAGG243180.11688415620795074No Hit
CGGGTG241370.11601418202119035No Hit
GTGCGG240220.11546143599092823No Hit
CGGGGT239350.11504327160281688No Hit
GGGCGT239050.11489907698622678No Hit
AGGAGG238890.11482217319071204No Hit
TGGAGG238280.11452897747031214No Hit
TGGGGA238060.11442323475147939No Hit
TGCGGG237790.11429345959654827No Hit
GGGCCG237670.11423578174991222No Hit
GGTCGG236450.11364939030911239No Hit
GGGGCT235820.11334658161427315No Hit
GCGGTG234430.11267847989073893No Hit
GGCTGG234250.11259196312078486No Hit
AGGGGA233760.112356445247021No Hit
GGACGG233020.11200076519276538No Hit
GGGTGC231460.11125095318649675No Hit
GGGCAG231220.11113559749322466No Hit
GCCGGG230060.11057804497574286No Hit
GGCGTG229260.1101935259981692No Hit
GTGGGC229250.11018871951094954No Hit
AGGGCG229200.11016468707485119No Hit
GGGTGA227910.10954465022351366No Hit
GGGCTG225930.10859296575401887No Hit
GAGAGG225710.10848722303518613No Hit
GCGCGG225540.10840551275245172No Hit
GTGTGT224190.1077566369777962No Hit
TCGGGG223280.10731924664080617No Hit
GAGGGA222560.10697317956098987No Hit
ACGGGG221970.1066895968150293No Hit
GGGGAA221640.10653098273678019No Hit
GGTGCG220620.10604072104037378No Hit
GGGAAG218670.105103456032538No Hit
GGGGTC217670.10462280731057094No Hit
AGCGGG216710.10416138453748255No Hit
TGGGCG215610.10363267094331877No Hit
CGAGGG214180.10294534327090588No Hit
GACGGG214070.10289247191148951No Hit
TGGGTT214010.10286363298817147No Hit
CCGGGG213860.10279153567987641No Hit
GGCCGG213400.10257043726777157No Hit
GGAGGA210480.10116694299962772No Hit
TTGTGG209970.10092181215142454No Hit
TGGTTG209190.10054690614829023No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)