FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15145357
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG889150.5870776106499174No Hit
GGGGGT409630.2704657275493737No Hit
GGGTGG404380.2669993186690812No Hit
AGGGGG394850.26070696121590264No Hit
GGGGTG388490.2565076544580626No Hit
TGGGGG376150.24835994291847993No Hit
GGGGGA356760.23555733945393298No Hit
GGTGGG351020.23176739907814653No Hit
GAGGGG347040.22913953101270576No Hit
GTGGGG346960.2290867095440537No Hit
GCGGGG332050.21924210832402302No Hit
GGGGAG328560.21693777175407616No Hit
GGAGGG323400.2135307870260173No Hit
GGGAGG322110.21267904084400258No Hit
CGGGGG317800.20983328422037195No Hit
GGGGCG294850.19468012540080765No Hit
GGCGGG291560.19250784250249103No Hit
GGGCGG288450.19045440790864157No Hit
GGGGGC283480.18717287416863135No Hit
GGGTGT259990.17166317043566554No Hit
GGGTTG224950.14852736716605622No Hit
GTGGTG220480.14557596760512148No Hit
GGGGTT218220.14408376111570034No Hit
GGTGGT218040.1439649128112332No Hit
GGTTGG215100.1420237238382694No Hit
TGGGGT213520.1409804998323909No Hit
TGTGGG210100.13872238204751464No Hit
GTTGGG209930.13861013642662898No Hit
ATGGGG207840.1372301755580935No Hit
AGGTGG207110.1367481796566433No Hit
GTGGGT205560.13572476370150932No Hit
TGGGTG204550.13505789265977686No Hit
GGGGTA203780.13454948602400063No Hit
TTGGGG202610.13377697204496403No Hit
AGGGTG201860.1332817707763508No Hit
GTGTGG198830.13128115765115342No Hit
AGTGGG197970.1307133268631436No Hit
GGATGG195340.12897682108120662No Hit
GTAGGG194430.12837597687528926No Hit
GAGGTG194120.12817129368426244No Hit
AGGGGT193740.12792039170816508No Hit
AAGGGG193470.12774211925146434No Hit
GGTAGG191800.12663947109335225No Hit
GGGTAG191710.12658004694111866No Hit
TGAGGG184870.12206381137136615No Hit
TGGTGG184690.12194496306689898No Hit
GATGGG180630.11926427353280614No Hit
GGGTGA179100.11825406294483516No Hit
GAAGGG175070.11559318146148684No Hit
GGGAAG173460.11453014940486382No Hit
GGTGTG172900.11416039912429927No Hit
ACGGGG171360.11314358585274682No Hit
GGTGGA170800.11277383557218229No Hit
GTGAGG170480.11256254969757397No Hit
GAGTGG169650.1120145269603087No Hit
GGCGGT168360.11116278077829397No Hit
GTGGGA167760.11076661976340339No Hit
GAGGGT167750.11076001707982189No Hit
GGAGGT164980.10893107372774374No Hit
CGGTGG164910.10888485494267319No Hit
CGGGGT164030.10830381878750034No Hit
GGCTGG163070.10766996116367544No Hit
GGGATG161740.10679180424733468No Hit
AGGGAG161480.10662013447421542No Hit
TAGGGG161210.10644186201751468No Hit
GGGTCG160060.10568255340564107No Hit
GGGGAA159290.10517414676986486No Hit
AGGGGA156520.10334520341778672No Hit
GGGCGT155690.10279718068052143No Hit
AGGAGG155440.10263211359098369No Hit
CGGGTG155430.10262551090740217No Hit
GGGGAT154610.10208409085371842No Hit
GAGGGA154480.10199825596715878No Hit
GGTGAG154350.10191242108059916No Hit
GGTCGG152010.10036739312252593No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)