FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21500987
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG910710.42356660184948725No Hit
GGGGGT563900.2622670298810003No Hit
GTGGGG539070.2507187228195617No Hit
TGGGGG504620.2346962025510736No Hit
GGTGGG498980.2320730671573356No Hit
GGGTGG484130.22516640747701488No Hit
GGGGTG481900.22412924578764687No Hit
GGGGGC430010.1999954699754016No Hit
CGGGGG418410.19460036881097598No Hit
AGGGGG410680.19100518501778546No Hit
GGGCGG395200.18380551553284508No Hit
GGCGGG389700.18124749342902258No Hit
GGGAGG378450.17601517548938567No Hit
GAGGGG374300.1740850315383196No Hit
GGGGCG372530.17326181351581674No Hit
GCGGGG370590.17235952935555934No Hit
GGGTGT362790.16873178891741109No Hit
GGAGGG358830.1668900130026589No Hit
GGTGGT351420.16344365958641807No Hit
GGGGGA343130.1595880226335656No Hit
TTGGGG342570.15932756947390367No Hit
GGGTTG328990.15301158035210197No Hit
GGGGTT328060.152579042069092No Hit
TGTGGG317670.1477467057675073No Hit
TGGGGT316880.1473792807744128No Hit
GTGGGT313470.14579330707004287No Hit
TGGGTG312010.14511426847521No Hit
GGGGAG311810.14502124948961645No Hit
GGTTGG310790.14454685266308936No Hit
GTTGGG306420.1425143878278704No Hit
TGGTGG293730.13661233319195998No Hit
GTGTGG292760.13616119111183128No Hit
GTGGTG274360.12760344443722513No Hit
GGGGCT270880.12598491408789744No Hit
CGGGGT265000.12325015591144724No Hit
GTGCGG259140.12052469963355636No Hit
GGTGTG258820.12037586925660669No Hit
GGTAGG255310.11874338605943997No Hit
TGTTGG255180.11868292371880416No Hit
GGGGTA254630.11842712150842191No Hit
GGGTGC239810.11153441467594022No Hit
GGGGTC238150.11076235709551381No Hit
ATGGGG238040.11071119665343736No Hit
GGGCGT238010.11069724380559831No Hit
AGTGGG236680.11007866755140125No Hit
TCGGGG235630.10959031787703512No Hit
GGTTTG230790.10733925842567134No Hit
TTTGGG230460.10718577709944198No Hit
GGTCGG230350.10713461665736554No Hit
TAGGGG229800.1068788144469833No Hit
GGGTAG228050.10606489832303977No Hit
AGGGGT227200.1056695676342672No Hit
GTAGGG226350.10527423694549465No Hit
TTGGGT223440.10392081070510857No Hit
TGGGGC223190.10380453697311663No Hit
GGGTCG222350.10341385723362374No Hit
GGGCTG222190.10333944204514892No Hit
GAGGGT220760.10267435629815506No Hit
GTCGGG220430.1025208749719257No Hit
TGGGTT219980.10231158225434023No Hit
GGCGGT219890.10226972371082314No Hit
CGTGGG218270.10151626992751543No Hit
AGGTGG217470.10114419398514125No Hit
GGATGG217130.10098606170963222No Hit
TGCGGG216740.1008046746877248No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)