FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7311486
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG166450.2276554998532446No Hit
GGCGGG114750.15694483994088207No Hit
GGGTGG104570.14302154172216155No Hit
TGGGGG103410.1414349969349596No Hit
GGGGTG102030.13954755572259867No Hit
CGGGGG101570.13891840865181168No Hit
ATGGGG99640.13627872637655328No Hit
GTGGGG95740.13094465338509845No Hit
GCGGGG92080.12593883103927161No Hit
GGTGGT91800.12555587195270565No Hit
GGGCGG91600.12528232974801565No Hit
GGGGTT90300.12350430541753071No Hit
TGCAAT90050.12316237766166822No Hit
GGGGCG84170.1151202368437825No Hit
GGGGGC82620.11300028475743507No Hit
GGTGGG82620.11300028475743507No Hit
TGTGGG82050.1122206894740686No Hit
GGGGAG81590.11159154240328163No Hit
CGGTGG81080.11089400978132216No Hit
GAGGGG80240.10974513252162418No Hit
GGGTTA79320.10848683838005023No Hit
TGCGGG78000.1066814598290963No Hit
TGGTGG77950.10661307427792381No Hit
GGGGAT77940.10659939716768932No Hit
TTAGGG77070.10540948857728784No Hit
GGGGTA75910.10382294379008589No Hit
AGCGGG75820.10369984979797542No Hit
GGGGGT75120.10274245208156042No Hit
TTGGGG73150.10004806136536402No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)