FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16875040
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG670780.3974983170410263No Hit
GGGGGT365030.2163135613308176No Hit
TGGGGG348570.20655951037745687No Hit
GTGGGG326680.19358768927362544No Hit
CGGGGG311620.18466326598336952No Hit
AGGGGG306240.18147512539229538No Hit
GGTGGG301090.17842328077444558No Hit
GGGGCG289420.17150774161127916No Hit
GGGTGG275350.1631699835970759No Hit
GGGAGG263380.1560766670775299No Hit
GGGGAG259220.15361148773573277No Hit
GGAGGG253510.15022779205264106No Hit
GGGCGG248580.1473063174961363No Hit
GGGGGA247150.14645891209739353No Hit
GCGGGG241460.14308706823806047No Hit
GGGGTG236660.14024263053598687No Hit
GAGGGG223470.1324263527671638No Hit
TTGGGG223080.13219524220387033No Hit
GGCGGG218970.1297596924214698No Hit
GTTGGG212580.12597303473058435No Hit
GGGGTT208380.12348415174126995No Hit
TGGGGT203620.12066341768671363No Hit
TGGTGG201010.11911675468621111No Hit
TGTGGG188900.11194047540035461No Hit
CTGGGG187160.11090936673335294No Hit
ATGGGG186680.11062492296314556No Hit
GGTTGG182900.10838492827276261No Hit
GGGGCT182280.10801752173624478No Hit
GTAGGG177540.1052086395054471No Hit
TAGGGG177210.10501308441342955No Hit
GTGGGT176810.10477604793825673No Hit
GGGTGT176520.10460419649375646No Hit
GGGTTG175410.10394642027515195No Hit
GGTGGT175400.10394049436327263No Hit
GGGGGC175250.10385160568508282No Hit
TGAGGG173910.10305753349325393No Hit
GGGTAG173600.10287383022499502No Hit
TGCGGG170080.10078790924347439No Hit
GTGTGG169840.1006456873583707No Hit
CGGGGT169630.10052124320890497No Hit
GGCTGG169320.10033753994064608No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)