FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9755233
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAATT715270.7332167258332015No Hit
GGGGGG569700.5839942521106365No Hit
TGGGGG276950.28389890841151616No Hit
GTGGGG257620.2640839024552258No Hit
GGGTGG257550.2640121460963567No Hit
GGGGGT250170.2564469756898682No Hit
CGGGGG229900.23566838434304951No Hit
AGGGGG227870.23358744993584468No Hit
GGTGGG226470.23215232275846207No Hit
GGGGTG221850.22741640307309932No Hit
GGCGGG214630.22001524720116883No Hit
GGGGAG214160.21953345450590467No Hit
GAGGGG210700.2159866401960876No Hit
GGGAGG203630.20873924795030524No Hit
GGAGGG198200.20317300468374258No Hit
GGGGGA197930.2028962301566759No Hit
GCGGGG184100.18871922382581738No Hit
GGGGCG179400.18390129687317566No Hit
GGGCGG162910.16699754890529012No Hit
GTGTGG162320.16639274530910744No Hit
TTGGGG160960.16499862176536428No Hit
GGGGGC149940.15370212069768094No Hit
ATGGGG142540.14611644847437266No Hit
GGGTGT139500.14300017231777037No Hit
GTTGGG138410.1418828233010939No Hit
GTGGGT136050.13946360891636314No Hit
TGGTGG135160.1385512780678842No Hit
TGGGGT133170.13651134729431885No Hit
GGTGGT132980.1363165800345312No Hit
TGTGGG129960.13322080569474865No Hit
GGTTGG127700.13090410039411668No Hit
TGGGTG125470.12861814781871433No Hit
TGAGGG124810.12794158786366253No Hit
GTGGTG124610.12773656969546499No Hit
GTAGGG124120.12723427518338107No Hit
CTGGGG122550.12562488256303053No Hit
GGGTTG122060.12512258805094661No Hit
GGGGTT120000.12301090091851215No Hit
GGGTAG118000.12096071923653694No Hit
GGGGTA116540.11946408660869505No Hit
GGATGG115860.11876702483682348No Hit
TAGGGG113820.11667583952120876No Hit
GTCGGG110980.11376458153280397No Hit
GGGGAT109710.11246271616474973No Hit
GTGAGG109450.11219619254609295No Hit
GAAGGG109380.11212443618722383No Hit
TGCGGG109040.11177590530128804No Hit
TGGGGA108710.11143762532376213No Hit
AGTGGG108510.1112326071555646No Hit
CGGTGG107810.11051504356687329No Hit
CGGGGT107600.1102997744902659No Hit
TTGTGG107000.10968471998567333No Hit
TGGGCG106560.1092336800156388No Hit
GGTGGA106490.10916192365676965No Hit
AAGGGG106210.10887489822129312No Hit
AGGTGG105270.10791131283076477No Hit
GGGTCG105040.10767554193733762No Hit
AGGGGT105030.10766529102892776No Hit
GTGGAG104670.1072962583261722No Hit
GGTGTG104640.10726550560094258No Hit
GGTGAG103440.10603539659175747No Hit
GTGGGA103370.10596364023288835No Hit
AGGGTG101860.10441575306299705No Hit
AGAGGG101420.10396471309296251No Hit
GGAAGG100970.1035034222145181No Hit
TGGGAG100510.1030318804276638No Hit
GGCAGG100480.10300112770243418No Hit
GAGTGG99030.10151474598300214No Hit
GGTAGG99030.10151474598300214No Hit
GTGGCG98970.10145324053254288No Hit
GGCTGG98250.10071517512703183No Hit
GGAGGT98160.10062291695134293No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)