FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7026705
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG466890.6644508343526588No Hit
CGGGGG234000.33301526106475227No Hit
TGGGGG211050.30035414892186313No Hit
GGGTGG187500.2668391514941925No Hit
GTGGGG183760.2615165998857217No Hit
GGGGGC180100.25630789964855505No Hit
GGGGGT178970.25469974902888337No Hit
GGGGTG177100.25203847322464795No Hit
GGCGGG175830.25023108270519395No Hit
AGGGGG167200.2379493660257546No Hit
GGGCGG161860.23034978699119998No Hit
GCGGGG161680.23009362140576556No Hit
GGGGCG161180.22938205033511438No Hit
GGGGAG160840.2288981820070716No Hit
GGTGGG153620.21862309574686856No Hit
GGAGGG152470.2169864822843708No Hit
GGGGGA148400.21119429376927024No Hit
GAGGGG146250.20813453816547015No Hit
GGGAGG137520.19571050727190056No Hit
CGCGGG103140.14678288045392543No Hit
CAGGGG99900.14217189991610577No Hit
CTGGGG99710.14190150290925832No Hit
CCGGGG95220.13551159469481072No Hit
GGGTCG93350.13285031889057533No Hit
GGGCCG93090.1324803019338367No Hit
GGCCGG92730.13196797076296785No Hit
GTGTGG91920.13081522562851294No Hit
CGGGGT91440.1301321174006878No Hit
GGGGCT91410.13008942313644875No Hit
CGGTGG89790.1277839328675389No Hit
TCGGGG88980.126631187733084No Hit
GGCTGG88950.12658849346884493No Hit
TGCGGG86860.12361412639352298No Hit
GGGGCC86530.12314448948689322No Hit
CGGGCG86260.12276024110874158No Hit
TGGTGG85960.12233329846635087No Hit
GGGTGT85840.1221625214093946No Hit
TGGGTG85540.12173557876700389No Hit
AGGTGG84870.1207820735323313No Hit
TTGGGG84090.11967202266211546No Hit
GGCGCG83500.11883236879874706No Hit
GGGTAG83250.11847658326342148No Hit
GCCGGG83190.11839119473494335No Hit
GTGGGT82370.11722421817907538No Hit
GGGCAG81940.11661226705831539No Hit
GGGTTG81900.1165553413726633No Hit
ATGGGG81830.11645572142277212No Hit
CGAGGG81550.11605724162320745No Hit
GTCGGG81150.11548798476668652No Hit
GCGTGG80380.1143921653178837No Hit
GGCGGT80070.11395099125407998No Hit
AGCGGG79020.1124566920057125No Hit
GGGGAT78720.11202974936332177No Hit
TGGCGG78560.1118020466207134No Hit
GCAGGG78170.11124702118560548No Hit
TGGGGC78080.11111893839288826No Hit
TAGGGG78070.11110470697147524No Hit
ACGGGG78040.11106201270723619No Hit
GGGCGC77560.11037890447941105No Hit
CGGGGC77450.11022235884386779No Hit
AGGGGT77140.10978118478006406No Hit
CGGGGA76700.10915500223789101No Hit
GGGGTT76680.10912653939506498No Hit
CGGGAG76280.10855728253854402No Hit
GTGGTG75650.10766070298952354No Hit
TGGGGT75440.10736184313985003No Hit
GGCAGG75060.10682104912615514No Hit
TGGGAG74950.10666450349061189No Hit
GGGCTG74920.10662180922637282No Hit
GTAGGG74440.10593870099854769No Hit
GGTGGT73430.10450132743583229No Hit
GGGGTC73190.10415977332191974No Hit
CGGGTG72770.10356205362257273No Hit
GTGAGG72740.10351935935833367No Hit
TGGGCG72670.1034197394084425No Hit
GGTTGG72640.10337704514420344No Hit
GGATGG72480.10314934240159504No Hit
GTGGCG72480.10314934240159504No Hit
GTTGGG72430.10307818529452994No Hit
CGTGGG72350.10296433392322575No Hit
AAGGGG72140.10266547407355225No Hit
AGGGGA72030.10250892843800899No Hit
GGCGTG72020.10249469701659598No Hit
GGGACG71890.10230968853822667No Hit
TGAGGG71400.1016123488889885No Hit
GGTCGG71320.10149849751768432No Hit
GCTGGG71220.10135618330355407No Hit
GGGCGT71160.10127079477507595No Hit
GGGGAC70720.10064461223290291No Hit
CGGCGG70390.10017497532627312No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)