FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7516093
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG224730.2989984291040571No Hit
GGGTGG135200.1798806906726673No Hit
TGGGGG132540.17634161791239145No Hit
GTGGGG125850.16744071687244955No Hit
GGGGGT125520.16700165897361835No Hit
AGGGGG111730.14865436071639881No Hit
GGGGTG104280.1387422960306638No Hit
GGGGGC99610.13252896152296145No Hit
GGGGCG96870.12888345048418107No Hit
GGTGGG96670.12861735478791975No Hit
GGGGGA94790.1261160552430631No Hit
GGGTGT93550.12446626192624279No Hit
TGTGGG87830.11685592501316841No Hit
GGGGTT86550.11515291255709582No Hit
CGGGGG85400.1136228623035931No Hit
GAGGGG84320.11218594554378185No Hit
GTGTGG84170.11198637377158585No Hit
GGGGAG83320.11085546706247514No Hit
GGAGGG82280.10947176944191618No Hit
TTGGGG79740.10609235409939713No Hit
GTTGGG78950.1050412760991648No Hit
GGTGTG75750.10078374495898335No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)