FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20203549
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1620090.8018838670374201No Hit
GGGTGG705860.34937426092811713No Hit
GGGGGT692180.3426031733335564No Hit
TGGGGG689190.3411232353286049No Hit
GTGGGG646520.32000318359907953No Hit
GGGGTG644940.31922114278040953No Hit
CGGGGG603650.2987841393608618No Hit
AGGGGG602830.29837827007522294No Hit
GGCGGG591990.2930128761040944No Hit
GGTGGG586920.29050341600874185No Hit
GGGAGG552100.2732688202453935No Hit
GGGGGA551010.2727293110730199No Hit
GGGGCG550980.272714462196716No Hit
GGAGGG545830.2701654050978865No Hit
GAGGGG540020.2672896727203721No Hit
GCGGGG526490.2605928295073306No Hit
GGGGAG522770.2587515688456518No Hit
GGGGGC496210.24560536369129998No Hit
GGGCGG440830.2181943380343721No Hit
GGGTTG336500.1665548958749772No Hit
GTGTGG331620.16413947866288245No Hit
TGGTGG320240.1585068049182844No Hit
GGGTGT310120.15349778397844854No Hit
TTGGGG309950.15341364034606No Hit
TGTGGG306690.15180006245437372No Hit
GGGGTT305890.1514040924196041No Hit
GGCTGG305370.15114671189700382No Hit
GGTTGG301020.14899362483294395No Hit
GTGGGT300710.14884018644447072No Hit
TGGGGT294760.14589515931087157No Hit
GGTGGT292480.1447666447117781No Hit
GGGTAG289230.14315801644552648No Hit
AGGGGT288640.14286598854488386No Hit
ATGGGG286790.1419503078394791No Hit
GGGGTA284860.14099503013059736No Hit
TAGGGG284120.14062875784843543No Hit
GTGGTG283570.1403565284495313No Hit
GGGTGA282960.14005460129801947No Hit
TGAGGG282080.13961903425977287No Hit
GGATGG278640.13791636311026345No Hit
GGCGGT277970.1375847382061439No Hit
CGGTGG275350.13628793634227332No Hit
AAGGGG270690.13398141088974022No Hit
GGTAGG269930.13360523935670907No Hit
TGGGTG268950.13312017606411627No Hit
GGGTCG264650.13099183712722948No Hit
AGGTGG264280.13080870098614852No Hit
GGGGCT261410.12938815848641247No Hit
GGAGGT261060.12921492159620074No Hit
GGTGTG261050.1292099719707661No Hit
GAGTGG260740.1290565335822929No Hit
GTTGGG259260.12832398901796907No Hit
TGCGGG258190.12779437909646468No Hit
GTGGCG257060.12723507142235257No Hit
GGTGGA255870.12664606599563275No Hit
GGGATG255860.12664111637019812No Hit
AGGGTG255120.12627484408803621No Hit
GAGGGT253760.12560169502892785No Hit
GGAAGG252520.1249879414750349No Hit
GGGGAT252390.12492359634438484No Hit
CGGGGT251630.1245474248113537No Hit
AGAGGG250540.12400791563898007No Hit
TGGGCG249720.1236020463533412No Hit
CTGGGG248420.12295859504684054No Hit
AGTGGG247920.12271111377510951No Hit
GGGGCA247210.12235969036925147No Hit
GGGGAA246830.12217160460273589No Hit
TGGGAG242670.12011256042193379No Hit
TGGAGG241230.11939981435934845No Hit
GGCAGG239930.1187563630528478No Hit
GGTGAG239250.11841978852329361No Hit
AGCGGG238330.11796442298330852No Hit
TGGGGA237940.11777138759135833No Hit
TCGGGG237510.11755855369766964No Hit
GATGGG237500.11755360407223502No Hit
GTGGGA235960.11679136175530348No Hit
CAGGGG235320.11647458572748778No Hit
GTAGGG235040.1163359962153184No Hit
CGCGGG232040.11485110858493228No Hit
GTGAGG231430.11454918143342044No Hit
GTCGGG227030.11237134624218746No Hit
GGCGGA225360.11154475879460585No Hit
GGGAAG225290.11151011141656349No Hit
CGTGGG224490.11111414138179386No Hit
GGCGCG223490.1106191788383318No Hit
AGGGAG223320.11053503520594328No Hit
GGTCGG222500.1101291659203044No Hit
TGGCGG221690.10972824626010014No Hit
GGGCTG220320.10905014757555714No Hit
GAAGGG219060.10842649477079498No Hit
GGCCGG218880.1083374015129718No Hit
CGGGGA218650.10822356012797553No Hit
GGAGTG217570.10768900058103653No Hit
TGGGGC217250.10753061256712867No Hit
GGGAGT216890.10735242605148235No Hit
AGGAGG216630.10722373579018221No Hit
CGAGGG216510.10716434028496677No Hit
ACGGGG216470.10714454178322827No Hit
GAGGTG215680.10675352137389327No Hit
CGGGTG215300.10656543560737769No Hit
GGCGTG215000.10641694684433908No Hit
GGTGCG214290.10606552343848104No Hit
GCGGGT213570.10570915040718837No Hit
GCGTGG213320.10558540977132286No Hit
GGAGGA213300.10557551052045361No Hit
GTGCGG212010.10493700883938757No Hit
GTGGAG211900.10488256295960675No Hit
CGGGCG211730.1047984193272182No Hit
GCAGGG211140.1045063914265756No Hit
GGAGAG210990.1044321470450563No Hit
GGGAGA210100.10399163038137507No Hit
GCCGGG207500.10270472776837376No Hit
GGGCAG204700.10131883264668004No Hit
GCTGGG202670.10031405868345211No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)