FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15655766
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG518380.3311112340335184No Hit
GTGGGG317510.20280706801570741No Hit
GGGGGT275020.17566690764284545No Hit
GGGGTG268910.17176419218325056No Hit
TGGGGG267420.17081246615464232No Hit
GGGTGG264180.1687429410991452No Hit
GGTGGG250440.1599666218823148No Hit
CGGGGG243960.15582757177132056No Hit
GGGGCG241560.15429459024873007No Hit
AGGGGG235170.15021302694483296No Hit
GGCGGG221210.14129618442176511No Hit
GGAGGG213790.13655671654775628No Hit
GGGGAG213130.1361351466290439No Hit
GCGGGG210090.13419337003376264No Hit
GTGTGG206100.131644788252456No Hit
GAGGGG198810.12698835687758744No Hit
GGGCGG197890.12640071396059446No Hit
GGGGGC197840.1263687768455405No Hit
GGGTTG189130.12080533140313926No Hit
GGGAGG188680.12051789736765356No Hit
GTGGTG187110.11951507195495897No Hit
GGGGGA183760.11737528524634311No Hit
TGGTGG182600.11663434417709105No Hit
GTTGGG177630.11345979494072664No Hit
TGGGTG175660.11220147260760029No Hit
GTGGGT175430.11205456187835204No Hit
TGTGGG172120.10994032486177935No Hit
GGGGTT169630.10834985653209175No Hit
TTGGGG168090.10736619338842955No Hit
GTGGCG167770.10716179585208414No Hit
GGGTGT163790.10461960149378828No Hit
GGTGTG161270.10300997089506832No Hit
GGTGGT158740.10139395287333754No Hit
TGGGGT158280.10110013141484103No Hit
GGGGCT157150.10037835261462134No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)