FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483431

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483431
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11319233
Sequences flagged as poor quality0
Sequence length6
%GC58

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG984280.8695642187063382No Hit
GGGTGG412760.3646536828069534No Hit
GTGGGG404400.357268023372255No Hit
AGGGGG403870.35679979376694515No Hit
CGGGGG392020.3463308865538858No Hit
TGGGGG382520.33793809174172845No Hit
GGGGGT368190.32527822335665324No Hit
GGGGGC337640.2982887621449262No Hit
GAGGGG332460.2937124803420868No Hit
GGGGCG331420.29279369017317697No Hit
GGTGGG330910.2923431296095769No Hit
GGGAGG320990.2835792849215137No Hit
GGGGGA319160.2819625676050665No Hit
GCGGGG305720.27008897157607764No Hit
GGGGTG305610.2699917918466737No Hit
GGGCGG301530.2663873073378735No Hit
GGGGAG300270.26527415771015583No Hit
GGAGGG285960.25263195836679037No Hit
GTGTGG208340.1840584074910376No Hit
GGGTGT197690.1746496427805665No Hit
GGCGGG197630.17459663565543707No Hit
GGGTTG188180.16624801344755427No Hit
CTGGGG187130.1653203887577895No Hit
TGGTGG186390.1646666342145267No Hit
ATGGGG185420.16380968569160118No Hit
AGGTGG180650.15959561924381271No Hit
GGGTAG179200.15831461371985187No Hit
CGGTGG177880.15714845696700475No Hit
GTGGGT177350.1566802273616949No Hit
TTGGGG175750.15526670402491052No Hit
TGGGGT174000.1537206628753026No Hit
GTAGGG173620.1533849510828163No Hit
AGGGGT173410.15319942614486334No Hit
AAGGGG168610.14895885613451018No Hit
GGGGCA167370.14786337554850226No Hit
TAGGGG167350.14784570650679246No Hit
TGTGGG166780.14734213881806305No Hit
GGGGTA163310.14427656008141188No Hit
CAGGGG162290.14337543895421184No Hit
GGGGTT159860.14122865038647053No Hit
AGGGTG159660.14105195996937248No Hit
GGTAGG156870.1385871286508547No Hit
AGTGGG154560.13654635433337223No Hit
GTGGTG153900.13596327595694868No Hit
TGGGTG152560.13477945016239173No Hit
GTGGCG152510.13473527755811723No Hit
CGGGTG151370.13372814218065837No Hit
GGATGG150890.13330408517962303No Hit
GTTGGG150380.132853524616023No Hit
TGAGGG150080.13258848899037595No Hit
GGGGAT149720.13227044623959944No Hit
GGGTCG149720.13227044623959944No Hit
TGCGGG149670.13222627363532494No Hit
GGTTGG148040.13078624673597583No Hit
GTGAGG146930.12980561492108167No Hit
GGCTGG145770.12878081050191298No Hit
GGGTGA143890.12711992058119131No Hit
GAAGGG143010.1263424827459599No Hit
GTGGGA142770.12613045424544225No Hit
GGTGGT142670.12604210903689322No Hit
GTGGAG141820.12529117476422652No Hit
TGGGAG141760.12523816763909712No Hit
AGGGGA141150.12469926186694806No Hit
CGGGGC139930.12362145032264996No Hit
TGGGGA139220.12299419934195188No Hit
GGGGCT138880.1226938256328852No Hit
GTGGGC138320.12219909246501065No Hit
AGCGGG138100.12200473300620279No Hit
GCGTGG137620.12158067600516749No Hit
TGGGCG137480.12145699271319886No Hit
GAGTGG137240.1212449642126812No Hit
TCGGGG136970.12100643214959883No Hit
CGGGGA136680.12075023104480666No Hit
CCGGGG135380.11960174333366932No Hit
AGAGGG134770.11906283756152031No Hit
AGGGCG134730.11902749947810068No Hit
CGTGGG134480.1188066364567281No Hit
GGGGAA134100.11847092466424182No Hit
GAGGTG133740.11815288191346533No Hit
GGGGCC133690.11810870930919082No Hit
AGGGAG133660.11808220574662612No Hit
CGAGGG133480.11792318437123789No Hit
CGGGGT133350.11780833560012414No Hit
GTGCGG133120.1176051416204614No Hit
TGGAGG132140.11673935857668095No Hit
GGGAGT131710.11635947417992015No Hit
GCAGGG131150.11586474101204561No Hit
GGGTGC129830.11469858425919847No Hit
GGGATG129300.11423035465388866No Hit
GAGGGA128650.11365611079832No Hit
CGCGGG128140.11320555023471997No Hit
CGGGAG127470.1126136373374415No Hit
GGGCTG127420.11256946473316698No Hit
GGAAGG127410.1125606302123121No Hit
GGGACG126930.11213657321127678No Hit
GGTGTG126320.11159766743912773No Hit
GGGCGT125530.11089974029159042No Hit
GATGGG125210.11061703562423354No Hit
ACGGGG124680.11014880601892371No Hit
GGCAGG124520.11000745368524528No Hit
GGGGTC124240.109760087101308No Hit
CGGGCG124030.10957456216335507No Hit
AGGGGC123000.10866460651530012No Hit
TGGGGC122380.10811686622229616No Hit
GCTGGG122070.10784299607579419No Hit
CGGAGG121050.10694187494859414No Hit
TGGCGG120670.10660616315610785No Hit
GGGGAC120470.1064294727390098No Hit
GAGGCG120420.10638530013473528No Hit
GGGCAG120290.10627045136362154No Hit
GGTCGG119920.10594357409199015No Hit
GCGGTG118750.10490993515196657No Hit
GGGAAG118570.10475091377657832No Hit
GACGGG118060.1043003532129783No Hit
GGTGGA117540.10384095812852338No Hit
GGTGAG117470.10377911648253904No Hit
AGGAGG117150.10349641181518218No Hit
GGGAGA114650.10128778160145657No Hit
GGAGGT114440.10110225666350361No Hit
GGGCCG113520.10028948074485258No Hit
GGTGCG113290.10008628676518984No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)