FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15671079
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG447300.28543025020804247No Hit
GTGGGG289010.18442252763833303No Hit
GGGTGG280030.17869222661694195No Hit
TGGGGG259660.16569375982343015No Hit
GGGGGT250570.1598932658051178No Hit
CGGGGG247960.1582277774236222No Hit
GGGGTG243560.15542005754677135No Hit
AGGGGG237290.1514190567222589No Hit
GGTGGG231750.1478838821500421No Hit
GGGGCG228340.14570789924548272No Hit
GGCGGG224710.14339153034708074No Hit
GGGGAG221630.14142612643328517No Hit
GGAGGG220050.14041789975023417No Hit
GAGGGG202040.12892539179976056No Hit
GTGTGG196200.1251987817813949No Hit
GGGCGG192720.12297813060606738No Hit
GGGAGG192320.1227228833445355No Hit
GCGGGG187220.11946848076000381No Hit
GGGGGC183600.11715849304314016No Hit
GTGGTG182140.11622684053854875No Hit
GGGGGA179970.11484212414473823No Hit
GGGTTG175560.11202802308634906No Hit
TGGTGG170160.10858218505566845No Hit
GGGTGT170060.10851837324028549No Hit
GGGTAG167340.10678269186186862No Hit
CTGGGG166720.10638705860649418No Hit
GTGGGT166540.1062721973388048No Hit
GTTGGG164450.10493853039730067No Hit
TTGGGG164000.10465137722807727No Hit
ATGGGG160960.10271149804043486No Hit
GGGGTT159260.10162669717892431No Hit
TGTGGG158680.10125658864970305No Hit
CGGTGG157340.10040151032357121No Hit
TGGGTG157320.10038874796049463No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)