FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9690647
Sequences flagged as poor quality0
Sequence length6
%GC61

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG688740.7107265386924113No Hit
GGCGGG333920.34457967563982056No Hit
CGGGGG304610.31433401711980635No Hit
GTGGGG285170.29427343705740183No Hit
GGGGCG284460.2935407718390733No Hit
AGGGGG280630.28958850735146996No Hit
GGGGGT279230.2881438153716671No Hit
GGGCGG277210.28605933122938026No Hit
GCGGGG265650.27413030316758No Hit
GGGGGC261080.2694144157763666No Hit
GGGTGG244600.25240832732840235No Hit
GGAGGG240320.24799169756157666No Hit
GGGGTG239470.2471145631452678No Hit
GGTGGG234870.2423677180687729No Hit
GGGGAG233270.24071664152042685No Hit
TGGGGG231570.2389623726878092No Hit
GGGAGG227230.23448382755042052No Hit
GGGGGA227070.23431871989558592No Hit
GAGGGG197260.20355709995421356No Hit
GGCCGG182590.18841879185156574No Hit
GGCGCG156070.16105219806272997No Hit
GCCGGG151630.1564704606410697No Hit
GGGCCG145380.15002094287409293No Hit
GTCGGG144770.149391469940036No Hit
CGCGGG144010.14860720857957163No Hit
GGGTCG140600.14508835168590908No Hit
GGCGGT138990.1434269559091359No Hit
AGCGGG138220.14263237532024436No Hit
GGGGCC138120.14252918303597273No Hit
CCGGGG136120.14046533735054015No Hit
GGGTTG135320.13963979907636714No Hit
GGGGTT134150.1384324493503891No Hit
CGGGCG133830.13810223404071986No Hit
GGCAGG133310.13756563416250742No Hit
GGCGAG132840.13708063042643076No Hit
GTAGGG132630.13686392662946034No Hit
GGCGGC131650.1358526422435984No Hit
CTGGGG129410.13354113507591392No Hit
GGGGCA128640.13274655448702238No Hit
GGGGCT128630.13273623525859524No Hit
CGGTGG128140.13223059306566423No Hit
ATGGGG127520.13159080090318015No Hit
GGCGGA126700.1307446241721528No Hit
GCAGGG125330.12933088987763147No Hit
TGCGGG125240.12923801682178704No Hit
GTGGCG125000.12899035533953512No Hit
GTGTGG124540.12851567083188561No Hit
CGGGGA124510.12848471314660415No Hit
CGGCGG122750.12666852894342348No Hit
GGCTGG122090.12598745986723076No Hit
GGTTGG122020.1259152252682406No Hit
GGCGTG121930.12582235221239613No Hit
GGGCTG120840.12469755631383539No Hit
GGTAGG120300.1241403179787686No Hit
GGGCGT120100.12393393341022534No Hit
AGGTGG119820.12364499501426479No Hit
CAGGGG119110.12291232979593622No Hit
GACGGG118980.12277817982638312No Hit
GTGGGT118620.12240668760300526No Hit
TTGGGG118200.12197328000906442No Hit
GCGCGG117740.12149859550141491No Hit
GGGTAG116760.12048731111555297No Hit
GTTGGG116530.12024996886172823No Hit
CGGGTG116200.11990943432363184No Hit
AGGGGT115440.11912517296316746No Hit
GGGCGC115390.11907357682103166No Hit
GGGAGT115160.11883623456720692No Hit
GGGCAG115120.11879495765349828No Hit
GATGGG114680.11834091160270309No Hit
CGGGGC114630.11828931546056728No Hit
GGGGTA114580.11823771931843148No Hit
GGTGGT114260.11790750400876227No Hit
CGGGGT113800.11743281950111278No Hit
GTGCGG112800.11640089665839651No Hit
GGAAGG112770.116369938973115No Hit
GGATGG111650.11521418538927278No Hit
GGAGGC110490.11401715489172189No Hit
GGTCGG110410.11393460106430457No Hit
GCTGGG110380.11390364337902309No Hit
GCGGGT110090.11360438575463538No Hit
TGGCGG109590.11308842433327723No Hit
CGAGGG109340.11283044362259817No Hit
CGTGGG108610.11207713994741528No Hit
GTGAGG107810.11125160167324226No Hit
TCGGGG107790.11123096321638794No Hit
GGGGTC107780.11122064398796078No Hit
GGGTGT106720.11012680577468151No Hit
GGGGAT105310.10867179456645155No Hit
AGGCGG104250.10757795635317229No Hit
GGTGGA103900.1072167833582216No Hit
GGTGTG103760.10707231416024132No Hit
GGGGAA103500.10680401422113509No Hit
GCGTGG103330.10662858733787332No Hit
GGACGG103230.10652539505360169No Hit
GGGAAG103070.10636028739876707No Hit
GGAGGT102790.10607134900280653No Hit
TGAGGG102370.10563794140886569No Hit
GGTGCG102280.10554506835302122No Hit
GAAGGG101670.10491559541896428No Hit
GTGGAG100970.10419324942906288No Hit
TGGGCG100810.1040281417742283No Hit
GTGGTG100700.10391463026152949No Hit
GCGGGC100330.10353281880972447No Hit
GTGGGC99930.10312004967263795No Hit
GGGTGC99430.10260408825127981No Hit
AAGGGG99410.10258344979442548No Hit
GGGACG99050.10221195757104762No Hit
ACGGGG98120.1012522693273215No Hit
CGGGAG97940.10106652321563256No Hit
GGGCGA97680.10079822327652632No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)