FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10151071
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG502500.4950216583058083No Hit
GCAATT304450.29991909228100166No Hit
GGGGGT303360.29884531395751246No Hit
GTGGGG275510.271409785233499No Hit
GGGTGG269380.2653710135610321No Hit
TGGGGG263630.2597065866251945No Hit
GGGGTG253760.24998347465011328No Hit
GGTGGG243740.24011259501583626No Hit
AGGGGG230970.2275326416296369No Hit
CGGGGG205340.20228407426172074No Hit
GGGGGC199730.19675756380779919No Hit
GGGGCG199030.19606798139821896No Hit
GGGAGG189090.18627591118217968No Hit
GGGCGG185900.18313338562994977No Hit
GCGGGG185600.18283785031155825No Hit
GGCGGG181450.17874961174047546No Hit
GGAGGG177400.17475988494218983No Hit
GGGGAG174290.17169616880819769No Hit
GGGGGA173950.17136122878068727No Hit
GAGGGG172550.16998206396152682No Hit
GTGGGT171500.16894769034715648No Hit
TTGGGG171090.16854379207868805No Hit
GTTGGG168710.16619921188611525No Hit
TGGTGG165220.16276115101549385No Hit
GGGGTT163610.16117511147345928No Hit
TGTGGG163120.16069240378675315No Hit
GTGTGG162740.16031805905012386No Hit
TGGGGT162280.15986490489525687No Hit
GGGTGT162240.159825500186138No Hit
GTGGTG159580.15720508702973313No Hit
GGTGGT148810.1465953690994773No Hit
TGGGTG148240.1460338519945334No Hit
GGGTTG147070.14488126425280642No Hit
GGTTGG143330.14119692395019207No Hit
GGTGTG138220.13616297236025637No Hit
GGGTCG132630.13065616426089424No Hit
AGGGGT130600.12865637527311158No Hit
ATGGGG129890.12795694168625163No Hit
AGTGGG128080.12617387859862272No Hit
AGGGTG124190.12234177063681262No Hit
GGGGTA123510.12167189058179181No Hit
GTCGGG121500.11969180394856857No Hit
GCTGGG120730.11893326329803033No Hit
GGGGAT119700.11791859203821942No Hit
GTGGGA118440.116677343700975No Hit
CTGGGG118310.11654927839633868No Hit
AGGTGG118100.1163424036734646No Hit
TAGGGG116600.11486472708150697No Hit
GATGGG116550.11481547119510838No Hit
GGGCGT116540.11480562001782867No Hit
GGGGCT115260.1135446693260248No Hit
GGGTTT114850.11314077105755639No Hit
GTAGGG113940.11224431392510209No Hit
TGGGGA113900.11220490921598322No Hit
TCGGGG113010.11132815443808836No Hit
GCGGGT112690.1110129167651374No Hit
CGGGGT112090.11042184612835435No Hit
TGCGGG110810.10916089543655048No Hit
GTGGGC110560.10891461600455755No Hit
GGAGGT110510.10886536011815895No Hit
TGGCGG110140.10850086655880942No Hit
GGGTAG109700.10806741475850185No Hit
GGCTGG109170.1075453023626768No Hit
CGGTGG108430.1068163152439777No Hit
GGATGG108360.10674735700301968No Hit
TGGGGC108340.10672765464846024No Hit
GGGTGA108180.10657003581198478No Hit
GGTAGG108160.10655033345742533No Hit
GTGTGT107970.1063631610891107No Hit
TGTGGT107590.10598881635248143No Hit
GGTTTG106310.10472786566067757No Hit
GTTGGT105800.10422545561941199No Hit
GTGGTT105320.10375259910998555No Hit
GGTCGG104780.10322063553688078No Hit
GTTTGG104250.10269852314105576No Hit
CGGGTG103940.10239313664538452No Hit
TTGGGT103830.10228477369530761No Hit
GGCGGT103490.10194983366779721No Hit
GTGTTG103330.10179221483132175No Hit
GTGGCG103060.10152623304476936No Hit
TGGGCG103000.10146712598109106No Hit
CGTGGG102880.10134891185373444No Hit
TGAGGG102520.10099426947166462No Hit
GAGGGT102300.10077754357151084No Hit
GAGTGG102150.10062977591231506No Hit
GGGATG101780.10026528235296552No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)