FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483439

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483439
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5547996
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG335590.604885079225003No Hit
GTGGGG163140.2940521226042701No Hit
GGGGGT159820.28806797986155724No Hit
AGGGGG156210.2815611258551736No Hit
GGGTGG154590.2786411525891511No Hit
CGGGGG143790.25917466414900087No Hit
TGGGGG137880.2485221690859186No Hit
GGCGGG137250.24738662392690983No Hit
GGGGTG137090.24709823150557428No Hit
GGTGGG129340.2331292235971331No Hit
GGAGGG126520.22804630717109384No Hit
GAGGGG126120.22732532611775494No Hit
GGGGAG117540.21186028252363556No Hit
GGGGGA111070.20019841398587887No Hit
GGGAGG107440.19365551092682837No Hit
GGGGCG104690.18869876618512343No Hit
GCGGGG102390.18455312512842473No Hit
GGGGGC100340.18085809723006288No Hit
GGGCGG95400.1719539812213275No Hit
GGGTAG90870.16378887079226445No Hit
TTGGGG84620.15252354183384415No Hit
TGGTGG84360.15205490414917386No Hit
GGGTTG84280.15191070793850608No Hit
GTGTGG82150.14807148382947644No Hit
GGTGGT82090.14796333667147563No Hit
TGGGTG81900.14762087067113963No Hit
GTAGGG80190.14453867666811585No Hit
GGTGTG79330.1429885674034372No Hit
GGGTGT79070.14251992971876692No Hit
TGGGGT77460.13961798097907785No Hit
GTCGGG76610.13808589624073267No Hit
TAGGGG76180.13731084160839335No Hit
GTGGGT74750.13473333434270682No Hit
GGGGTA74580.13442691739503776No Hit
ATGGGG73720.13287680813035913No Hit
GGTTGG73700.1328407590776922No Hit
TGTGGG73040.131651140339683No Hit
GGGGTT70760.1275415483356513No Hit
AGGTGG70700.12743340117765045No Hit
GTGGTG70620.12728920496698268No Hit
CTGGGG70430.12694673896664668No Hit
GGAGTG69840.12588329191297182No Hit
GTGAGG69110.12456750149062834No Hit
CAGGGG68450.12337788275261916No Hit
AGGGTG68000.12256677906761289No Hit
GGCTGG67920.12242258285694511No Hit
GAAGGG67450.12157543011927188No Hit
GAGTGG67290.12128703769793633No Hit
AGTGGG67220.12116086601360204No Hit
AGGGGT66570.11998927180192631No Hit
CGGTGG66270.11944853601192215No Hit
GTTGGG66240.11939446243292172No Hit
GGATGG65970.11890780022191796No Hit
GGGATG65530.11811472106324518No Hit
GGCAGG65110.11735769095723933No Hit
GATGGG64930.11703324948323683No Hit
TGAGGG64920.11701522495690336No Hit
CGGGGT64740.11669078348290085No Hit
GGGTGA64260.11582560621889418No Hit
GGGAGT63890.1151586987445557No Hit
CGTGGG63850.11508660063922181No Hit
CGGGTG63110.11375278569054484No Hit
GGAGGT61270.1104362728451859No Hit
GTGGGA61210.11032812568718506No Hit
CGCGGG61020.10998565968684908No Hit
GGCGGT60970.10989553705518174No Hit
GAGGTG60600.10922862958084324No Hit
CGAGGG58820.10602026389348515No Hit
GGGGAA58760.1059121167354843No Hit
GTGGAG58600.10562372431414874No Hit
TGGGGA58150.10481262062914248No Hit
TGCGGG57920.10439805652347262No Hit
AGCGGG57440.10353287925946594No Hit
GGAAGG57000.10273980010079314No Hit
GGTAGG56860.10248745673212453No Hit
GGCGTG56700.10219906431078898No Hit
GGGGAT56050.10102747009911325No Hit
GCGGGT55970.10088327388844548No Hit
AGAGGG55780.10054080788810951No Hit
AAGGGG55490.10001809662443881No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)