FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11052412
Sequences flagged as poor quality0
Sequence length6
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG462560.4185149811642925No Hit
GGGGGT336730.3046665288988503No Hit
GGGTGG271870.2459825059000696No Hit
GTGGGG267500.24202861782568366No Hit
CGGGGG258420.23381321651780623No Hit
TGGGGG257950.23338796997433683No Hit
GGGGTG248360.22471113092780112No Hit
GGTGGG241820.21879387051441804No Hit
AGGGGG209200.18927995083788043No Hit
GGGGTT201490.18230409796522243No Hit
GGTGGT191400.1731748689788256No Hit
GGGTGT190660.1725053318678312No Hit
GGGGAG189590.17153721739652847No Hit
GGGGGA188520.17056910292522573No Hit
GGGCGG180900.1636746802417427No Hit
GGCGGG179880.16275180476442608No Hit
GGGGGC179570.1624713230017122No Hit
GGAGGG178920.16188321607989278No Hit
GTGGGT178070.16111415318212893No Hit
GGGTTG177950.16100557959656225No Hit
GGGAGG177200.1603269946867706No Hit
GAGGGG173310.15680740095465134No Hit
TTGGGG172260.15585738208094305No Hit
GTGTGG168620.15256398331875431No Hit
GCGGGG168270.15224731036085154No Hit
TGGGGT163300.14775055435863232No Hit
GGTTGG163010.14748816819351288No Hit
TGGTGG161290.14593194680039073No Hit
CGGGGT159850.14462906377359078No Hit
TGTGGG156230.1413537606089965No Hit
GGTGTG155430.14062993670521876No Hit
GGGGCG155130.14035850274130207No Hit
GGGGAT153060.13848560839027718No Hit
TGGGTG152790.13824131782275217No Hit
GTGGTG141400.12793587499271653No Hit
GTTGGG139490.12620774542244714No Hit
CGGTGG139370.1260991718368805No Hit
GGGTTT138360.12518534415836108No Hit
GGCGGT135300.12241671772641122No Hit
GGAGGT133340.12064334916215573No Hit
AGGGGT132510.11989238186198632No Hit
GGGAGT131200.11870712021955025No Hit
GGGATG129950.11757614536989754No Hit
GGTTGT125730.11375797427746993No Hit
GAGGGT122110.11048267111287563No Hit
ATGGGG121460.10989456419105621No Hit
CGGGTG119340.10797643084604518No Hit
TGGTGT119200.10784976166288407No Hit
GTTGGT119100.10775928367491186No Hit
TGGGTT118260.10699926857594523No Hit
CTGGGG118180.10692688618556746No Hit
GGGGTC117970.1067368824108258No Hit
AGGTGG117020.10587734152508974No Hit
GGGCGT116240.10517161321890642No Hit
TAGGGG116160.10509923082852865No Hit
GGGTCG115490.10449302830911479No Hit
GAGTGG115310.1043301679307648No Hit
GTTTGG114960.10401349497286203No Hit
GGGGTA114680.10376015660653982No Hit
GGTAGG114160.1032896710690843No Hit
CGTGGG113950.10309966729434263No Hit
CGGGTT113730.10290061572080375No Hit
GTGGTT112920.10216774401822878No Hit
TGGGGA112220.10153439810242325No Hit
GTGTGT111160.10057533142991774No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)