FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483447

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483447
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11985484
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG395960.33036629976728515No Hit
GGGTGG256260.21380863718144383No Hit
GTGGGG247860.20680015925931736No Hit
GGGGGT240420.20059265024257675No Hit
GGTGGG212850.17758982449102598No Hit
GGGGTG210330.17548728111438802No Hit
TGGGGG206020.17189126446624936No Hit
GCGGGG183310.1529433437982146No Hit
GAGGGG182680.15241770795405507No Hit
GGGCGG175700.1465939965378119No Hit
CGGGGG175080.1460767041197502No Hit
AGGGGG168570.14064513373010218No Hit
GGGGGC167960.14013618473813824No Hit
GGCGGG166490.13890970110176612No Hit
GTGTGG161130.1344376247133616No Hit
GGAGGG158470.1322182733713549No Hit
GGGTGT154310.12874740811468274No Hit
GTGGGT154270.12871403441029164No Hit
GGGGGA148060.12353276680357674No Hit
GGTGGT145820.12166383935767633No Hit
GGGAGG145340.12126335490498338No Hit
GGGGTT145130.12108814295693023No Hit
GGGGAG139480.1163741072116904No Hit
GGTTGG139010.11598196618509524No Hit
GTTGGG135140.11275306028525842No Hit
GGGTTG134090.1118770005449926No Hit
GGGGCG128080.10686260146023306No Hit
CGGTGG127410.1063035919116825No Hit
GTAGGG126960.10592813773728288No Hit
TTGGGG125220.10447638159627096No Hit
TGGTGG123430.10298290832477021No Hit
GAGGGT122960.10259076729817504No Hit
GTGGTG121330.10123078884423858No Hit
GGGTAG121220.1011390111571631No Hit
TGGGGT120690.10069680957398132No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)