FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8443595
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG411150.4869371399267729No Hit
GGGGGT223830.2650885079163555No Hit
GGGTGG215500.2552230418441434No Hit
GTGGGG213710.2531030917517953No Hit
AGGGGG198790.23543289321669267No Hit
TGGGGG193060.22864668426185764No Hit
GGGGTG182290.21589145381795313No Hit
GGTGGG178100.21092911254033384No Hit
CGGGGG171640.20327834293331218No Hit
GGAGGG166310.19696586584268902No Hit
GAGGGG164680.1950354084960257No Hit
GGGGGA159090.18841500569366484No Hit
GGGGAG157790.1868753771349763No Hit
GCGGGG144450.17107641946351052No Hit
GGGAGG143170.16956047749803252No Hit
GGGGGC141710.16783135619365921No Hit
GGGGTT141100.16710891510073614No Hit
GGGGCG137480.16282164172961872No Hit
GTGGGT134590.15939892901068797No Hit
GTGTGG133220.15777639737576235No Hit
GGGTGT124710.14769775196465487No Hit
GGTGGT124600.1475674757019966No Hit
GGCGGG124080.14695162427852118No Hit
GGGTTG123830.14665554186338875No Hit
GGGCGG123710.1465134223041252No Hit
GTGGTG121020.14332757551730038No Hit
ATGGGG118720.14060361729808216No Hit
AGGTGG118120.13989301950176436No Hit
GTTGGG115230.13647030678283362No Hit
GGGGTA112690.13346210944508827No Hit
AGGGGT108250.12820368575233654No Hit
TTGGGG108020.12793128993041472No Hit
TGGGTG103580.12267286623766299No Hit
GGGTAG102550.12145300668731743No Hit
TGTGGG102030.120837155263842No Hit
TGGTGG100480.119001444290021No Hit
TGGGGT99280.11758024869738541No Hit
CGGGGT97340.11528264915595787No Hit
GGGGAT96600.11440624520716591No Hit
CGGTGG96170.11389698345313813No Hit
GGGGCT95990.11368380411424281No Hit
GGTTGG95840.11350615466516337No Hit
GAGGGT95660.11329297532626803No Hit
AGGGTG94790.11226260852160722No Hit
GTAGGG92650.10972814304807371No Hit
GTGTGT89410.10589091494795759No Hit
CTGGGG89020.10542902638035104No Hit
GGATGG88210.104469719355322No Hit
GGGTCG87270.1033564494744241No Hit
GGGTTT87220.10329723299139762No Hit
GGTGTG87190.10326170310158173No Hit
AGTGGG87170.10323801650837112No Hit
GTGGAG87140.10320248661855524No Hit
GTGTTG86300.10220764970371034No Hit
CGGGTG86280.10218396311049974No Hit
GGTGGA85440.1011891261956548No Hit
GGAGGT85430.10117728289904951No Hit
TGAGGG84930.10058511806878467No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)