FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005483465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8334456
Sequences flagged as poor quality0
Sequence length6
%GC59

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG863031.0354964979118013No Hit
GTGGGG370150.44412016813094934No Hit
GGGTGG356140.42731043273850144No Hit
GGGGTG355700.4267825038610798No Hit
TGGGGG343090.41165254216951896No Hit
AGGGGG333600.4002660761542205No Hit
GGGGGT315060.3780210730010453No Hit
GCGGGG304290.36509881388779303No Hit
GGTGGG301640.36191924223968547No Hit
GGCGGG286720.344017653941661No Hit
GAGGGG286270.34347772668066157No Hit
GGGGAG282420.33885834900322226No Hit
GGGCGG279380.3352108403955819No Hit
CGGGGG272170.3265600058360138No Hit
GGGGCG270080.324052343668261No Hit
GGGAGG263370.3160014282875811No Hit
GGAGGG262920.31546150102658166No Hit
GGGGGA225670.2707675221994093No Hit
GTGTGG181850.21819060536164567No Hit
TGGTGG170490.2045604416173053No Hit
GGGTTG165180.19818929993751241No Hit
TGGGTG162460.1949257396043605No Hit
GGGGTT160120.19211811784716362No Hit
TGTGGG158290.18992241365243273No Hit
GTGGTG151540.18182350473744177No Hit
GGGTGT150960.18112759848993146No Hit
TCGGGG146990.17636424020955896No Hit
GGTGGT146300.17553635174269322No Hit
AGGGTG145390.17444449883711666No Hit
GTTGGG144860.17380858450749515No Hit
GGCCGG143750.1724767639303633No Hit
TTGGGG143130.17173286414854189No Hit
GGTGTG142850.1713969094083645No Hit
GGTTGG141170.1693811809673001No Hit
AGGTGG140390.16844530704823446No Hit
TGGGGT139030.16681352688165849No Hit
GTGGGT135720.16284206191741848No Hit
GGGTAG135000.16197817829981945No Hit
GAGGTG133860.1606103625719543No Hit
AGTGGG133460.1601304272288437No Hit
GGGATG132670.15918255492620034No Hit
CGGGTG132270.15870261958308976No Hit
TAGGGG129870.15582300752442632No Hit
TGGCGG129850.1557990107572708No Hit
TGCGGG129230.15505511097544938No Hit
AAGGGG128810.1545511788651833No Hit
GGGGGC127000.15237947143760794No Hit
GAGTGG126390.1516475700393643No Hit
GGGTCG125980.15115563631267595No Hit
ATGGGG125610.15071169612029867No Hit
AGGGGT124800.14973982705049976No Hit
GGGCTG124770.14970383189976647No Hit
GAGGGT124590.1494878609953667No Hit
GGTAGG124300.14913990787161155No Hit
GGCTGG122980.14755612123934664No Hit
ACGGGG122400.1468602149918363No Hit
GCGTGG122020.14640427641588125No Hit
CGGGGT121710.14603232652497056No Hit
GTGAGG121090.14528842674314918No Hit
GGTGGA121060.14525243159241588No Hit
GTCGGG120660.1447724962493053No Hit
CAGGGG120080.14407659000179496No Hit
GAAGGG119880.14383662233023967No Hit
GTGCGG118620.14232482599944135No Hit
GTGGAG118520.1422048421636637No Hit
CGGTGG118500.1421808453965082No Hit
GGGCGT118280.14191688095779736No Hit
GGGGTA118150.14176090197128643No Hit
GGTCGG117900.14146094238184231No Hit
GGATGG117210.14063305391497657No Hit
GCCGGG116640.139949146051044No Hit
GTGGCG115370.13842535133666792No Hit
TGAGGG115200.13822137881584592No Hit
GCTGGG114970.13794541599355734No Hit
TGGGAG113910.1366735873343143No Hit
GATGGG113290.13592968755249293No Hit
GTAGGG112700.13522178292140483No Hit
GGTGCG112120.13452587667389448No Hit
TGGGCG112030.13441789122169462No Hit
GGCAGG111500.1337819768920731No Hit
TGGAGG111350.13360200113840662No Hit
GGGAGT111020.13320605448034042No Hit
GGAGTG110940.1331100674117183No Hit
GGCGTG110710.1328341045894297No Hit
CTGGGG110680.1327981094386964No Hit
GCGGTG109960.1319342258210974No Hit
GGGGCT109560.13145429047798682No Hit
GGCGGT109440.13131030987505363No Hit
GGGTGA109270.13110633735423163No Hit
AGCGGG107610.12911460568032274No Hit
GGTGAG107400.12886263962518968No Hit
GCAGGG106990.12837070589850136No Hit
GGGGAT105470.12654695159468118No Hit
GGAGGT105290.1263309806902814No Hit
GGAAGG105150.1261630033201927No Hit
CGTGGG105080.12607901463514837No Hit
GCGGGT104820.12576705666212648No Hit
CCGGGG104250.1250831487981939No Hit
CGGCGG104120.12492716981168298No Hit
GGGCAG103800.12454322153719452No Hit
GGGCCG103400.12406328619408394No Hit
GAGAGG103030.12361934600170665No Hit
GCGCGG102940.12351136054950676No Hit
GACGGG102620.12312741227501832No Hit
GTGTTG100510.12059575334011001No Hit
AGGAGG98790.11853203136473454No Hit
AGAGGG98640.11835205561106807No Hit
GAGCGG97680.1172002107876027No Hit
GTGGGA95940.11511249204507168No Hit
AGGCGG95500.11458456316765006No Hit
TGGTTG94990.11397264560518408No Hit
GGGAAG94670.11358869733069561No Hit
CGCGGG94450.11332473289198479No Hit
GGCGGA94250.11308476522042951No Hit
GCGGGA93680.11240085735649694No Hit
GGCGAG93370.11202890746558625No Hit
AGGGAG93160.11177694141045319No Hit
CGAGGG93030.11162096242394225No Hit
GGACGG92950.11152497535532015No Hit
TGGGGA92790.1113330012180759No Hit
GGGGCA92330.11078107557349876No Hit
GCGGAG91790.11013316286029946No Hit
TGTTGG90670.10878934389958984No Hit
GGGACG90610.10871735359812326No Hit
GTTGTG88840.10659363970485897No Hit
GAGGAG88790.10653364778697014No Hit
GAGGCG88420.10608970759459285No Hit
GAGGGA87870.10542979649781582No Hit
CGGAGG87430.10490186762039419No Hit
GCGAGG87330.10478188378461653No Hit
GGCGCG86040.10323409230308493No Hit
AGGGGA85670.10279015211070765No Hit
CGGGCG85590.10269416504208553No Hit
TTTGGG84580.10148232830073133No Hit
TTGTGG84020.10081041882037652No Hit
CGGGAG83380.1000425222713996No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)