FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11811637
Sequences flagged as poor quality0
Sequence length6
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG757250.6411050390390426No Hit
GGGTGG357960.30305706143864736No Hit
AGGGGG352160.2981466497827524No Hit
GGGGGT339450.28738607527474813No Hit
GGGGTG336130.2845752879130979No Hit
CGGGGG325700.2757450131594799No Hit
GTGGGG325100.2752370395399046No Hit
TGGGGG319970.27089386509253544No Hit
GGGCGG313680.2655686083139873No Hit
GGTGGG309790.2622752460137405No Hit
GGGAGG306030.2590919446644018No Hit
GGCGGG301170.25497735834584145No Hit
GGGGCG287790.24364954662931143No Hit
GGGGGC283770.24024612337815665No Hit
GAGGGG281120.23800257322503224No Hit
GCGGGG275080.23288897212130716No Hit
GGGGAG259630.21980865141724218No Hit
GGAGGG255060.2159395856814767No Hit
GGGGGA252960.21416167801296299No Hit
GGGTGT195360.1653962105337304No Hit
GGTGGT180210.1525698766394531No Hit
GTGGGT177340.1501400694924844No Hit
GTGTGG176540.1494627713330506No Hit
AGGGGT175500.1485822837257867No Hit
TGTGGG174210.1474901404436997No Hit
GGGTTG174000.14731234967684836No Hit
GGGTAG168960.1430453712724155No Hit
AGGTGG165920.1404716382665671No Hit
AGGGTG165200.1398620699230767No Hit
GTGGTG163200.13816882452449225No Hit
ATGGGG162930.13794023639568334No Hit
GGGGTT160810.1361453962731838No Hit
TGGGTG156340.13236099280734753No Hit
AAGGGG156280.13231019544539No Hit
TGGTGG156250.1322847967644112No Hit
GGTGTG152930.12947400940276102No Hit
GGTTGG152360.12899143446416445No Hit
TGGAGG151830.12854272443353956No Hit
TGGGGT147840.12516469986336357No Hit
AGTGGG145870.12349685314575785No Hit
GTGAGG145110.12285341989429577No Hit
GGGGCT143410.12141416130549898No Hit
CGGGGT142510.12065220087613597No Hit
GGGATG141920.12015269348355355No Hit
CGGGTG141060.11942459796216223No Hit
GGCAGG140180.11867956998678506No Hit
CTGGGG140150.1186541713058063No Hit
TGCGGG139130.11779061615252821No Hit
GGGCAG138320.11710485176610153No Hit
AGGCGG138030.11685933118330677No Hit
GTTGGG137870.11672387155142001No Hit
ACGGGG137150.11611430320792959No Hit
TAGGGG136990.11597884357604285No Hit
GGCCGG136820.11583491771716317No Hit
GGGGTA136630.11567405940429763No Hit
AGGAGG136400.11547933618346043No Hit
GGCGGT136260.1153608090055595No Hit
GGGTGA136010.11514915333073646No Hit
GGGCGT135860.11502215992584262No Hit
GGAGGT134460.1138368881468335No Hit
CGGTGG133800.11327811716530063No Hit
TGGGCG132470.11215210897524196No Hit
GGGTCG132420.11210977784027734No Hit
GGGGCA132170.11189812216545428No Hit
TTGGGG131160.11104303323916914No Hit
GGTGAG130870.11079751265637439No Hit
GATGGG130720.11067051925148054No Hit
GTGGCG130420.11041653244169289No Hit
GGGGTC129650.10976463296323785No Hit
GGGAGT129610.10973076805526619No Hit
GGTAGG129370.10952757860743605No Hit
GTGGGC129190.10937518652156344No Hit
GAGAGG128880.10911273348478284No Hit
GTGCGG128120.10846930023332074No Hit
GGGAAG128030.10839310419038445No Hit
AGCGGG127530.10796979284073835No Hit
GGCGTG126750.10730942713529038No Hit
TGGGAG126420.10703004164452395No Hit
CGGAGG126210.1068522508776726No Hit
CCGGGG125960.10664059520284952No Hit
GGGGAT125740.10645433820900524No Hit
GAAGGG125630.1063612097120831No Hit
GTAGGG125560.10630194612313265No Hit
GGCTGG125140.10594636458942991No Hit
GCGGGT124320.10525213397601027No Hit
GAGGTG124300.10523520152202442No Hit
AGGGGC124090.10505741075517307No Hit
GGGCCG123800.10481189017237831No Hit
TGGCGG123760.10477802526440662No Hit
TGGGGC123530.1045833020435694No Hit
AGGGCG123370.10444784241168265No Hit
GCGAGG123340.10442244373070388No Hit
GGACGG122910.10405839597000822No Hit
AGGGAG122870.10402453106203653No Hit
GGAAGG121950.10324563817868768No Hit
GGTCGG121690.1030255162768717No Hit
CAGGGG121420.1027969281480628No Hit
CGTGGG121120.10254294133827513No Hit
GTCGGG120940.10239054925240254No Hit
CGAGGG120320.10186564317884134No Hit
GCGGTG119640.10128993974332261No Hit
GAGGGT119630.10128147351632971No Hit
TGAGGG119450.1011290814304571No Hit
GGGACG118560.10037558722808702No Hit
GTGGAG118390.10023166136920733No Hit
CGCGGG118370.10021472891522148No Hit
GCGTGG118180.10005387060235597No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)