FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11057371
Sequences flagged as poor quality0
Sequence length6
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG369310.33399440065816727No Hit
TGGGGG199320.18025984657655061No Hit
GGGGGT192780.1743452399309022No Hit
GGGTGG188890.17082722466307768No Hit
GGGGTG184500.1668570223428336No Hit
GGTGGG181390.16404441887678364No Hit
CGGGGG174890.1581659871953288No Hit
GGCGGG170280.15399682257202008No Hit
GTGGGG165510.14968295809193705No Hit
AGGGGG164940.1491674648521787No Hit
GGGGCG163530.1478922973643554No Hit
GGAGGG152490.13790800724693056No Hit
GGGGAG152360.13779043861330148No Hit
GGGGGC152300.13773617616701112No Hit
GGGGGA140640.12719117410458597No Hit
GAGGGG138670.12540955711805274No Hit
GCGGGG138040.12483980143200406No Hit
GGGCGG133960.12114995508426009No Hit
GGGAGG125920.11387878728135288No Hit
GGGTGT123960.11210621403586801No Hit
GGGTAG113430.10258315471191118No Hit
GGGGTT113160.10233897370360459No Hit
GGTTGG112650.1018777429101366No Hit
GGCCGG111660.10098241254634578No Hit
GTGTGG111550.10088293139481348No Hit
TGTGGG110610.10003281973626461No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)