FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005483473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005483473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15461708
Sequences flagged as poor quality0
Sequence length6
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGG1179960.7631498408843318No Hit
GTGGGG561440.36311641637521547No Hit
GGGGGT523410.3385201686644192No Hit
TGGGGG501770.32452430223103423No Hit
CGGGGG485390.31393038854439625No Hit
GGGTGG484860.31358760623341225No Hit
GGGGTG481860.3116473290014273No Hit
GGGGCG447120.28917891865504125No Hit
GGTGGG435530.28168298094880595No Hit
GGCGGG430520.278442717971391No Hit
GGGGGC426230.2756681215296525No Hit
GAGGGG425250.2750342976338707No Hit
GCGGGG423750.27406415901787823No Hit
GGGGAG421200.272414923370691No Hit
GGGCGG421040.27231144191831846No Hit
GGGAGG399600.25844492730039914No Hit
AGGGGG384260.24852364305418262No Hit
GGGGGA383920.248303744967891No Hit
GGAGGG382050.24709430549328704No Hit
GTGGGT280460.18139005082750237No Hit
GTCGGG267380.17293044209604785No Hit
GTGGCG255620.16532455534666674No Hit
GTGGTG254460.16457431481696588No Hit
CTGGGG250980.16232359322786333No Hit
GTGTGG249110.16111415375325935No Hit
GGGTGT240080.15527391928498455No Hit
GGGGTT234180.15145804072874744No Hit
GTTGGG232760.1505396428389412No Hit
TTGGGG230240.14890980996407382No Hit
CGGGGT229990.14874812019474173No Hit
GGTGGT224800.14539144058340772No Hit
GGTTGG223370.14446657510282823No Hit
GGCGGT222330.14379394566240677No Hit
GGTGTG221020.14294669127110665No Hit
GGCGCG219050.14167257588876986No Hit
GGGTTG218830.14153028889175762No Hit
ATGGGG215660.13948006261662682No Hit
TGGGGT215510.13938304875502758No Hit
GTGGAG215160.13915668307796267No Hit
TGTGGG210140.13590995250977447No Hit
GTGGGC209570.13554129983569732No Hit
GGGGCT209470.1354766239279645No Hit
GAGGGT208640.13493981389378198No Hit
GGCCGG207750.13436419831495977No Hit
GGTCGG206560.13359455501293907No Hit
GTAGGG205730.13305774497875655No Hit
GGGGTA204890.13251446735380076No Hit
CCGGGG203150.13138910655924949No Hit
GCGGGT203100.13135676860538306No Hit
GGGTCG202620.13104632424826546No Hit
GTGCGG202230.1307940882081074No Hit
TGGGGC200000.12935181546566527No Hit
GCCGGG199730.1291771905147866No Hit
GGGCGT198920.12865331566215063No Hit
GGGTAG198820.1285886397544178No Hit
TCGGGG197430.12768964463693144No Hit
GGCGTG195290.12630558021144883No Hit
CGGTGG193840.12536777954932277No Hit
TGGTGG193820.1253548443677762No Hit
TGCGGG193370.12506380278297843No Hit
AGGGGT192940.12478569637972725No Hit
GGGGAT192840.12472102047199442No Hit
GGGGCA192320.1243847057517837No Hit
GCGGGC191890.12410659934853252No Hit
GGTGCG191300.1237250114929088No Hit
GTGGGA190050.12291656264624841No Hit
GAGGTG189870.1228001460123293No Hit
CGTGGG189710.12269666455995676No Hit
GGCAGG189100.12230214152278648No Hit
GGGGCC188560.1219528916210292No Hit
GACGGG187800.12146135472225966No Hit
CGGGGC186150.12039420224466792No Hit
AGGTGG185910.12023898006610914No Hit
CGGGTG185540.11999967920749764No Hit
CGGGCG184090.11906187854537158No Hit
TGGGCG184030.11902307300073187No Hit
GGGGTC183870.11891959154835934No Hit
TGGCGG182820.1182404945171646No Hit
GGGCCG182580.11808527233860579No Hit
TGAGGG182410.11797532329545998No Hit
GGAGTG181710.11752259194133016No Hit
GGGAGT181020.1170763281779736No Hit
CGGCGG180240.11657185609765751No Hit
GGCTGG179740.11624847655899335No Hit
AGCGGG179740.11624847655899335No Hit
GTGAGG179730.11624200896822007No Hit
GGGCTG178990.11576340725099711No Hit
TGGGTG178610.11551763880161235No Hit
GGGATG178290.11531067589686728No Hit
GCGTGG178030.11514251853676193No Hit
GGTGAG176480.11414004196690301No Hit
GAAGGG176390.11408183364994347No Hit
GGTGGC175890.11375845411127929No Hit
AAGGGG173660.11231618136883714No Hit
TGGGGA173460.11218682955337148No Hit
CGCGGG173280.11207041291945237No Hit
AGGGGC172800.11175996856233478No Hit
GCGGTG172630.11165001951918894No Hit
GGAGGT171530.11093858453412779No Hit
GGCGAG171070.11064107535855676No Hit
GAGGCG170970.11057639945082393No Hit
AGAGGG170790.11045998281690482No Hit
CAGGGG169990.10994257555504217No Hit
GGCGGC169720.10976795060416353No Hit
GCTGGG169580.10967740433333756No Hit
GATGGG169370.10954158492709862No Hit
CGGGGA168430.10893363139441No Hit
GGGCAG168370.10889482584977028No Hit
CGGGAG168280.10883661753281074No Hit
GGGTGA166840.10790528446145795No Hit
GCGCGG165120.10679285884845323No Hit
CGGAGG163860.10597794241101954No Hit
GGACGG163170.10553167864766298No Hit
GCGGCG162330.10498840102270718No Hit
GGGTGC161870.10469089184713617No Hit
AGGCGG161840.10467148907481631No Hit
GGCGGA161360.10436104471769872No Hit
TGGGAG161290.10431577158228575No Hit
GGTAGG160830.1040182624067147No Hit
GGTGGA159400.10309339692613519No Hit
AGTGGG159390.10308692933536191No Hit
AGGGCG159120.10291230438448327No Hit
GGGACG158950.10280235534133744No Hit
GCAGGG158810.10271180907051149No Hit
TAGGGG158730.10266006834432521No Hit
GGGGAA158150.10228494807947479No Hit
GGAGAG157900.10212325831014271No Hit
GGGCGA157620.10194216576849077No Hit
GAGGGC157430.10181928154379838No Hit
GGATGG156080.10094615678940516No Hit
AGGGTG155590.10062924484151427No Hit
GGAGGA154910.10018944866893101No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)